Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   HIN86_RS18375 Genome accession   NZ_CP051875
Coordinates   3793574..3794209 (+) Length   211 a.a.
NCBI ID   WP_038405422.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3788574..3799209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS18355 (HIN86_18355) - 3788652..3789467 (+) 816 WP_000011163.1 DsbC family protein -
  HIN86_RS18360 (HIN86_18360) - 3789712..3791013 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  HIN86_RS18365 (HIN86_18365) thrC 3791069..3792208 (+) 1140 WP_000063593.1 threonine synthase -
  HIN86_RS18370 (HIN86_18370) pbpG 3792315..3793361 (-) 1047 WP_153560314.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HIN86_RS18375 (HIN86_18375) letA 3793574..3794209 (+) 636 WP_038405422.1 response regulator Regulator
  HIN86_RS18380 (HIN86_18380) pilS 3794220..3795788 (+) 1569 WP_005129877.1 sensor histidine kinase Regulator
  HIN86_RS18385 (HIN86_18385) - 3795813..3797234 (+) 1422 WP_031999567.1 sigma-54-dependent transcriptional regulator -
  HIN86_RS18390 (HIN86_18390) - 3797238..3798422 (-) 1185 WP_000939107.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23177.81 Da        Isoelectric Point: 5.0959

>NTDB_id=388674 HIN86_RS18375 WP_038405422.1 3793574..3794209(+) (letA) [Acinetobacter baumannii strain Ab-B004d-c]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAITIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=388674 HIN86_RS18375 WP_038405422.1 3793574..3794209(+) (letA) [Acinetobacter baumannii strain Ab-B004d-c]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTACTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGTGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.762

99.526

0.545
  letA Legionella pneumophila strain ERS1305867

54.762

99.526

0.545