Detailed information NTG0388557

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: F4V23_RS08995
• Genome accession: NZ_CP044175
• Coordinates: 1725432..1726607 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli strain AR-0411
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1720432..1731607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V23_RS08970	ctsR	1721001..1721312 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
F4V23_RS08975	ctsD	1721290..1722708 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V23_RS08980	ctsP	1722701..1723297 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
F4V23_RS08985	-	1723294..1723890 (+)	597	WP_002779313.1	CDC27 family protein	-
F4V23_RS08990	ctsE	1723883..1725445 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
F4V23_RS08995	ctsF	1725432..1726607 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
F4V23_RS09000	-	1726604..1727368 (-)	765	WP_002781157.1	TSUP family transporter	-
F4V23_RS09005	-	1727371..1728135 (-)	765	WP_002781156.1	TIGR02757 family protein	-
F4V23_RS09010	flgK	1728152..1729978 (-)	1827	WP_002781155.1	flagellar hook-associated protein FlgK	-
F4V23_RS09015	-	1729988..1730422 (-)	435	WP_002781154.1	flagellar protein FlgN	-
F4V23_RS09020	-	1730461..1730658 (-)	198	WP_002781153.1	flagellar biosynthesis anti-sigma factor FlgM	-
F4V23_RS09025	-	1730721..1731062 (-)	342	WP_002781152.1	rod-binding protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=388557 F4V23_RS08995 WP_002781160.1 1725432..1726607(+) (ctsF) [Campylobacter coli strain AR-0411]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=388557 F4V23_RS08995 WP_002781160.1 1725432..1726607(+) (ctsF) [Campylobacter coli strain AR-0411]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTATCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611