Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V23_RS08970 Genome accession   NZ_CP044175
Coordinates   1721001..1721312 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain AR-0411     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1716001..1726312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS08960 - 1716675..1717313 (+) 639 WP_072231938.1 HAD family hydrolase -
  F4V23_RS08965 nifJ 1717417..1720977 (+) 3561 WP_002785869.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V23_RS08970 ctsR 1721001..1721312 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  F4V23_RS08975 ctsD 1721290..1722708 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V23_RS08980 ctsP 1722701..1723297 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  F4V23_RS08985 - 1723294..1723890 (+) 597 WP_002779313.1 CDC27 family protein -
  F4V23_RS08990 ctsE 1723883..1725445 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=388553 F4V23_RS08970 WP_002779316.1 1721001..1721312(+) (ctsR) [Campylobacter coli strain AR-0411]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388553 F4V23_RS08970 WP_002779316.1 1721001..1721312(+) (ctsR) [Campylobacter coli strain AR-0411]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment