Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F4V23_RS04365 Genome accession   NZ_CP044175
Coordinates   840932..841702 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain AR-0411     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 835932..846702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS04335 aspS 836068..837819 (+) 1752 WP_002812716.1 aspartate--tRNA ligase -
  F4V23_RS04340 - 837816..838391 (+) 576 WP_002781658.1 adenylate kinase -
  F4V23_RS04345 ppa 838401..838919 (+) 519 WP_002776378.1 inorganic diphosphatase -
  F4V23_RS04350 msrA 838967..839467 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F4V23_RS04355 - 839690..840544 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F4V23_RS04360 ruvX 840555..840935 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  F4V23_RS04365 dprA 840932..841702 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  F4V23_RS04370 - 841692..842744 (-) 1053 WP_057032312.1 divergent polysaccharide deacetylase family protein -
  F4V23_RS04375 ilvC 842747..843769 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  F4V23_RS04380 - 843892..845826 (+) 1935 WP_151061343.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=388547 F4V23_RS04365 WP_002776372.1 840932..841702(-) (dprA) [Campylobacter coli strain AR-0411]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=388547 F4V23_RS04365 WP_002776372.1 840932..841702(-) (dprA) [Campylobacter coli strain AR-0411]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment