Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | F4V25_RS08700 | Genome accession | NZ_CP044171 |
| Coordinates | 1591778..1592080 (+) | Length | 100 a.a. |
| NCBI ID | WP_002877750.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain AR-0413 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1586778..1597080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V25_RS08675 | rpsR | 1587140..1587400 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| F4V25_RS08680 | lon | 1587461..1589836 (-) | 2376 | WP_038402136.1 | endopeptidase La | - |
| F4V25_RS08685 | - | 1589853..1590500 (-) | 648 | WP_012006727.1 | outer membrane protein assembly factor BamD | - |
| F4V25_RS08690 | fliW | 1590661..1591050 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| F4V25_RS08695 | proC | 1591050..1591781 (+) | 732 | WP_002859150.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| F4V25_RS08700 | ctsT | 1591778..1592080 (+) | 303 | WP_002877750.1 | hypothetical protein | Machinery gene |
| F4V25_RS08705 | - | 1592077..1592739 (+) | 663 | WP_002877751.1 | hypothetical protein | - |
| F4V25_RS08710 | - | 1592736..1593188 (+) | 453 | WP_002877757.1 | hypothetical protein | - |
| F4V25_RS08715 | hemD | 1593185..1593814 (-) | 630 | WP_002877758.1 | uroporphyrinogen-III synthase | - |
| F4V25_RS08720 | thiE | 1593792..1594424 (-) | 633 | WP_002877759.1 | thiamine phosphate synthase | - |
| F4V25_RS08725 | thiD | 1594414..1595226 (-) | 813 | WP_002866107.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| F4V25_RS08730 | - | 1595223..1595909 (-) | 687 | WP_002866108.1 | endonuclease III domain-containing protein | - |
| F4V25_RS08735 | - | 1595906..1596667 (-) | 762 | WP_002856328.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12138.20 Da Isoelectric Point: 7.0039
>NTDB_id=388531 F4V25_RS08700 WP_002877750.1 1591778..1592080(+) (ctsT) [Campylobacter jejuni strain AR-0413]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=388531 F4V25_RS08700 WP_002877750.1 1591778..1592080(+) (ctsT) [Campylobacter jejuni strain AR-0413]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
98 |
100 |
0.98 |