Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V25_RS08695 Genome accession   NZ_CP044171
Coordinates   1591050..1591781 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain AR-0413     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586050..1596781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS08665 rpsF 1586192..1586569 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  F4V25_RS08670 ssb 1586578..1587129 (+) 552 WP_002877747.1 single-stranded DNA-binding protein -
  F4V25_RS08675 rpsR 1587140..1587400 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  F4V25_RS08680 lon 1587461..1589836 (-) 2376 WP_038402136.1 endopeptidase La -
  F4V25_RS08685 - 1589853..1590500 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  F4V25_RS08690 fliW 1590661..1591050 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  F4V25_RS08695 proC 1591050..1591781 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V25_RS08700 ctsT 1591778..1592080 (+) 303 WP_002877750.1 hypothetical protein Machinery gene
  F4V25_RS08705 - 1592077..1592739 (+) 663 WP_002877751.1 hypothetical protein -
  F4V25_RS08710 - 1592736..1593188 (+) 453 WP_002877757.1 hypothetical protein -
  F4V25_RS08715 hemD 1593185..1593814 (-) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  F4V25_RS08720 thiE 1593792..1594424 (-) 633 WP_002877759.1 thiamine phosphate synthase -
  F4V25_RS08725 thiD 1594414..1595226 (-) 813 WP_002866107.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V25_RS08730 - 1595223..1595909 (-) 687 WP_002866108.1 endonuclease III domain-containing protein -
  F4V25_RS08735 - 1595906..1596667 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=388530 F4V25_RS08695 WP_002859150.1 1591050..1591781(+) (proC) [Campylobacter jejuni strain AR-0413]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=388530 F4V25_RS08695 WP_002859150.1 1591050..1591781(+) (proC) [Campylobacter jejuni strain AR-0413]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996

Multiple sequence alignment