Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   F4V25_RS06305 Genome accession   NZ_CP044171
Coordinates   1120683..1121333 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain AR-0413     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115683..1126333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS06270 - 1116060..1117064 (+) 1005 WP_079460914.1 hypothetical protein -
  F4V25_RS06275 tlyA 1117061..1117822 (+) 762 WP_057099548.1 TlyA family RNA methyltransferase -
  F4V25_RS06280 ribF 1117788..1118642 (+) 855 WP_057098382.1 bifunctional riboflavin kinase/FAD synthetase -
  F4V25_RS06285 cmoA 1118629..1119339 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  F4V25_RS06290 - 1119329..1119550 (-) 222 WP_002859102.1 EexN family lipoprotein -
  F4V25_RS06295 - 1119547..1119981 (-) 435 WP_002855128.1 EexN family lipoprotein -
  F4V25_RS06300 - 1120040..1120672 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  F4V25_RS06305 CJE0566 1120683..1121333 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  F4V25_RS06310 nth 1121330..1121956 (-) 627 WP_002852225.1 endonuclease III -
  F4V25_RS06315 peb4 1122037..1122858 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  F4V25_RS06320 fbaA 1122858..1123922 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  F4V25_RS06325 - 1124017..1125459 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=388526 F4V25_RS06305 WP_002852117.1 1120683..1121333(-) (CJE0566) [Campylobacter jejuni strain AR-0413]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=388526 F4V25_RS06305 WP_002852117.1 1120683..1121333(-) (CJE0566) [Campylobacter jejuni strain AR-0413]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment