Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V25_RS02125 Genome accession   NZ_CP044171
Coordinates   340436..340747 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0413     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335436..345747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS02105 ctsE 336305..337864 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  F4V25_RS02110 ctsX 337854..338441 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  F4V25_RS02115 ctsP 338445..339053 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  F4V25_RS02120 ctsD 339046..340458 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V25_RS02125 ctsR 340436..340747 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  F4V25_RS02130 nifJ 340771..344331 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V25_RS02135 - 344424..345065 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=388520 F4V25_RS02125 WP_002862131.1 340436..340747(-) (ctsR) [Campylobacter jejuni strain AR-0413]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388520 F4V25_RS02125 WP_002862131.1 340436..340747(-) (ctsR) [Campylobacter jejuni strain AR-0413]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment