Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   F4V25_RS02110 Genome accession   NZ_CP044171
Coordinates   337854..338441 (-) Length   195 a.a.
NCBI ID   WP_002867036.1    Uniprot ID   A0A5T1DZF0
Organism   Campylobacter jejuni strain AR-0413     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332854..343441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS02090 - 333602..334366 (+) 765 WP_002877433.1 TIGR02757 family protein -
  F4V25_RS02095 - 334370..335134 (+) 765 WP_002867032.1 TSUP family transporter -
  F4V25_RS02100 ctsF 335127..336308 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  F4V25_RS02105 ctsE 336305..337864 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  F4V25_RS02110 ctsX 337854..338441 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  F4V25_RS02115 ctsP 338445..339053 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  F4V25_RS02120 ctsD 339046..340458 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V25_RS02125 ctsR 340436..340747 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23375.43 Da        Isoelectric Point: 9.8409

>NTDB_id=388517 F4V25_RS02110 WP_002867036.1 337854..338441(-) (ctsX) [Campylobacter jejuni strain AR-0413]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=388517 F4V25_RS02110 WP_002867036.1 337854..338441(-) (ctsX) [Campylobacter jejuni strain AR-0413]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACACATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGACTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DZF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99

Multiple sequence alignment