Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   F4V26_RS06620 Genome accession   NZ_CP044169
Coordinates   1298321..1298971 (+) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain AR-0414     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1293321..1303971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS06600 - 1294195..1295637 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  F4V26_RS06605 fbaA 1295732..1296796 (-) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  F4V26_RS06610 peb4 1296796..1297617 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  F4V26_RS06615 nth 1297698..1298324 (+) 627 WP_002852225.1 endonuclease III -
  F4V26_RS06620 CJE0566 1298321..1298971 (+) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  F4V26_RS06625 - 1298982..1299614 (+) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  F4V26_RS06630 - 1299672..1300106 (+) 435 WP_002870071.1 EexN family lipoprotein -
  F4V26_RS06635 - 1300103..1300324 (+) 222 WP_002859102.1 EexN family lipoprotein -
  F4V26_RS06640 cmoA 1300314..1301024 (-) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  F4V26_RS06645 ribF 1301011..1301865 (-) 855 WP_150969820.1 bifunctional riboflavin kinase/FAD synthetase -
  F4V26_RS06650 tlyA 1301831..1302592 (-) 762 WP_002870073.1 TlyA family RNA methyltransferase -
  F4V26_RS06655 - 1302589..1303593 (-) 1005 WP_011049741.1 membrane protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=388503 F4V26_RS06620 WP_002886738.1 1298321..1298971(+) (CJE0566) [Campylobacter jejuni strain AR-0414]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=388503 F4V26_RS06620 WP_002886738.1 1298321..1298971(+) (CJE0566) [Campylobacter jejuni strain AR-0414]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment