Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   F4V27_RS06525 Genome accession   NZ_CP044167
Coordinates   1256406..1257056 (-) Length   216 a.a.
NCBI ID   WP_004316452.1    Uniprot ID   A0A5Z5A9R1
Organism   Campylobacter jejuni strain AR-0415     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251406..1262056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS06490 - 1251784..1252788 (+) 1005 WP_074469325.1 hypothetical protein -
  F4V27_RS06495 tlyA 1252785..1253546 (+) 762 WP_004316456.1 TlyA family RNA methyltransferase -
  F4V27_RS06500 ribF 1253512..1254366 (+) 855 WP_002876662.1 bifunctional riboflavin kinase/FAD synthetase -
  F4V27_RS06505 cmoA 1254353..1255063 (+) 711 WP_074469304.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  F4V27_RS06510 - 1255053..1255274 (-) 222 WP_072238629.1 EexN family lipoprotein -
  F4V27_RS06515 - 1255265..1255705 (-) 441 WP_057100698.1 EexN family lipoprotein -
  F4V27_RS06520 - 1255763..1256395 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  F4V27_RS06525 CJE0566 1256406..1257056 (-) 651 WP_004316452.1 DNA/RNA non-specific endonuclease Regulator
  F4V27_RS06530 nth 1257053..1257679 (-) 627 WP_002866467.1 endonuclease III -
  F4V27_RS06535 peb4 1257760..1258581 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  F4V27_RS06540 fbaA 1258581..1259645 (+) 1065 WP_057100697.1 class II fructose-bisphosphate aldolase -
  F4V27_RS06545 - 1259740..1261182 (+) 1443 WP_004316451.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25449.28 Da        Isoelectric Point: 9.8868

>NTDB_id=388478 F4V27_RS06525 WP_004316452.1 1256406..1257056(-) (CJE0566) [Campylobacter jejuni strain AR-0415]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVKASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=388478 F4V27_RS06525 WP_004316452.1 1256406..1257056(-) (CJE0566) [Campylobacter jejuni strain AR-0415]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAAAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z5A9R1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

68.528

91.204

0.625

Multiple sequence alignment