Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   F4V31_RS05840 Genome accession   NZ_CP044162
Coordinates   1098841..1099491 (-) Length   216 a.a.
NCBI ID   WP_002874218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093841..1104491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS05805 - 1094220..1095223 (+) 1004 Protein_1113 hypothetical protein -
  F4V31_RS05810 tlyA 1095220..1095981 (+) 762 WP_002856959.1 TlyA family RNA methyltransferase -
  F4V31_RS05815 ribF 1095947..1096801 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  F4V31_RS05820 cmoA 1096788..1097498 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  F4V31_RS05825 - 1097488..1097709 (-) 222 WP_002859102.1 EexN family lipoprotein -
  F4V31_RS05830 - 1097706..1098140 (-) 435 WP_052821917.1 EexN family lipoprotein -
  F4V31_RS05835 - 1098198..1098830 (-) 633 WP_002928650.1 trimeric intracellular cation channel family protein -
  F4V31_RS05840 CJE0566 1098841..1099491 (-) 651 WP_002874218.1 DNA/RNA non-specific endonuclease Regulator
  F4V31_RS05845 nth 1099488..1100114 (-) 627 WP_002852225.1 endonuclease III -
  F4V31_RS05850 peb4 1100195..1101016 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  F4V31_RS05855 fbaA 1101016..1102080 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  F4V31_RS05860 - 1102175..1103617 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.09 Da        Isoelectric Point: 9.5529

>NTDB_id=388445 F4V31_RS05840 WP_002874218.1 1098841..1099491(-) (CJE0566) [Campylobacter jejuni strain AR-0419]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=388445 F4V31_RS05840 WP_002874218.1 1098841..1099491(-) (CJE0566) [Campylobacter jejuni strain AR-0419]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment