Detailed information NTG0388421

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: F4V32_RS07605
• Genome accession: NZ_CP044161
• Coordinates: 1450561..1451736 (+)
• Length: 391 a.a.
• NCBI ID: WP_002834117.1
• Uniprot ID: -
• Organism: Campylobacter coli strain AR-0420
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1445561..1456736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V32_RS07580	ctsR	1446130..1446441 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
F4V32_RS07585	ctsD	1446419..1447837 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V32_RS07590	ctsP	1447830..1448426 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
F4V32_RS07595	-	1448423..1449019 (+)	597	WP_002779313.1	CDC27 family protein	-
F4V32_RS07600	ctsE	1449012..1450574 (+)	1563	WP_052784799.1	GspE/PulE family protein	Machinery gene
F4V32_RS07605	ctsF	1450561..1451736 (+)	1176	WP_002834117.1	type II secretion system F family protein	Machinery gene
F4V32_RS07610	-	1451733..1452497 (-)	765	WP_002784060.1	TSUP family transporter	-
F4V32_RS07615	-	1452500..1453264 (-)	765	WP_002781156.1	TIGR02757 family protein	-
F4V32_RS07620	flgK	1453281..1455107 (-)	1827	WP_150966468.1	flagellar hook-associated protein FlgK	-
F4V32_RS07625	-	1455117..1455551 (-)	435	WP_002779263.1	flagellar protein FlgN	-
F4V32_RS07630	flgM	1455594..1455791 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
F4V32_RS07635	-	1455854..1456195 (-)	342	WP_002797636.1	rod-binding protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45488.33 Da
• Isoelectric Point: 9.4461

>NTDB_id=388421 F4V32_RS07605 WP_002834117.1 1450561..1451736(+) (ctsF) [Campylobacter coli strain AR-0420]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLAHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=388421 F4V32_RS07605 WP_002834117.1 1450561..1451736(+) (ctsF) [Campylobacter coli strain AR-0420]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGTGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTGCTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAACTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611