Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V32_RS07580 Genome accession   NZ_CP044161
Coordinates   1446130..1446441 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain AR-0420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441130..1451441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS07570 - 1441804..1442442 (+) 639 WP_057993149.1 HAD family hydrolase -
  F4V32_RS07575 nifJ 1442546..1446106 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V32_RS07580 ctsR 1446130..1446441 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  F4V32_RS07585 ctsD 1446419..1447837 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V32_RS07590 ctsP 1447830..1448426 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  F4V32_RS07595 - 1448423..1449019 (+) 597 WP_002779313.1 CDC27 family protein -
  F4V32_RS07600 ctsE 1449012..1450574 (+) 1563 WP_052784799.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=388417 F4V32_RS07580 WP_002779316.1 1446130..1446441(+) (ctsR) [Campylobacter coli strain AR-0420]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388417 F4V32_RS07580 WP_002779316.1 1446130..1446441(+) (ctsR) [Campylobacter coli strain AR-0420]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment