Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F4V32_RS03110 Genome accession   NZ_CP044161
Coordinates   591876..592646 (-) Length   256 a.a.
NCBI ID   WP_052779041.1    Uniprot ID   A0A3Z9EYH9
Organism   Campylobacter coli strain AR-0420     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 586876..597646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS03080 aspS 587012..588763 (+) 1752 WP_150966296.1 aspartate--tRNA ligase -
  F4V32_RS03085 - 588760..589335 (+) 576 WP_002776379.1 adenylate kinase -
  F4V32_RS03090 ppa 589345..589863 (+) 519 WP_002776378.1 inorganic diphosphatase -
  F4V32_RS03095 msrA 589911..590411 (+) 501 WP_072225248.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F4V32_RS03100 - 590634..591488 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F4V32_RS03105 ruvX 591499..591879 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  F4V32_RS03110 dprA 591876..592646 (-) 771 WP_052779041.1 DNA-processing protein DprA Machinery gene
  F4V32_RS03115 - 592636..593688 (-) 1053 WP_150966298.1 divergent polysaccharide deacetylase family protein -
  F4V32_RS03120 ilvC 593691..594713 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  F4V32_RS03125 - 594836..596770 (+) 1935 WP_150966300.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.17 Da        Isoelectric Point: 5.0727

>NTDB_id=388411 F4V32_RS03110 WP_052779041.1 591876..592646(-) (dprA) [Campylobacter coli strain AR-0420]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGAIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=388411 F4V32_RS03110 WP_052779041.1 591876..592646(-) (dprA) [Campylobacter coli strain AR-0420]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCCAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGCTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9EYH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment