Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMBM01240149_RS05150 Genome accession   NC_017514
Coordinates   1056507..1057184 (+) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis M01-240149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051507..1062184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS05130 (NMBM01240149_0900) leuD 1052312..1052953 (-) 642 WP_002219220.1 3-isopropylmalate dehydratase small subunit -
  NMBM01240149_RS05135 (NMBM01240149_0901) - 1053015..1053269 (-) 255 WP_002213442.1 hypothetical protein -
  NMBM01240149_RS05140 (NMBM01240149_0902) leuC 1053366..1054775 (-) 1410 WP_002219221.1 3-isopropylmalate dehydratase large subunit -
  NMBM01240149_RS05145 (NMBM01240149_0903) gshA 1055035..1056384 (+) 1350 WP_014581058.1 glutamate--cysteine ligase -
  NMBM01240149_RS15635 - 1056358..1056480 (-) 123 WP_255294323.1 hypothetical protein -
  NMBM01240149_RS05150 (NMBM01240149_0904) ysxA/radC 1056507..1057184 (+) 678 WP_002213447.1 RadC family protein Machinery gene
  NMBM01240149_RS05155 (NMBM01240149_0905) - 1057257..1057982 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMBM01240149_RS15640 - 1058005..1058133 (-) 129 WP_009347251.1 hypothetical protein -
  NMBM01240149_RS05160 (NMBM01240149_0906) - 1058135..1059415 (+) 1281 WP_014581059.1 CAP domain-containing protein -
  NMBM01240149_RS05165 (NMBM01240149_0907) hflX 1059420..1060598 (+) 1179 WP_002219225.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=38824 NMBM01240149_RS05150 WP_002213447.1 1056507..1057184(+) (ysxA/radC) [Neisseria meningitidis M01-240149]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=38824 NMBM01240149_RS05150 WP_002213447.1 1056507..1057184(+) (ysxA/radC) [Neisseria meningitidis M01-240149]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment