Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   F3129_RS15135 Genome accession   NZ_CP044133
Coordinates   3068136..3068780 (-) Length   214 a.a.
NCBI ID   WP_150941366.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063136..3073780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS15100 (F3129_15100) - 3064315..3064746 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  F3129_RS15105 (F3129_15105) - 3064746..3065087 (+) 342 WP_043020758.1 Na(+)/H(+) antiporter subunit C -
  F3129_RS15110 (F3129_15110) - 3065080..3066567 (+) 1488 WP_072589517.1 Na+/H+ antiporter subunit D -
  F3129_RS15115 (F3129_15115) - 3066573..3067049 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  F3129_RS15120 (F3129_15120) - 3067049..3067333 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  F3129_RS15125 (F3129_15125) mnhG 3067317..3067691 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  F3129_RS15130 (F3129_15130) - 3067731..3068114 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  F3129_RS15135 (F3129_15135) comA 3068136..3068780 (-) 645 WP_150941366.1 response regulator transcription factor Regulator
  F3129_RS15140 (F3129_15140) comP 3068861..3071161 (-) 2301 WP_032867184.1 histidine kinase Regulator
  F3129_RS15145 (F3129_15145) comX 3071175..3071348 (-) 174 WP_012118314.1 competence pheromone ComX -
  F3129_RS15150 (F3129_15150) - 3071317..3072177 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  F3129_RS15155 (F3129_15155) degQ 3072385..3072525 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  F3129_RS15165 (F3129_15165) - 3072991..3073332 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24262.67 Da        Isoelectric Point: 4.8698

>NTDB_id=388193 F3129_RS15135 WP_150941366.1 3068136..3068780(-) (comA) [Bacillus velezensis strain FJAT-46737]
MKKILVIDDQPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=388193 F3129_RS15135 WP_150941366.1 3068136..3068780(-) (comA) [Bacillus velezensis strain FJAT-46737]
ATGAAAAAGATACTAGTGATTGATGATCAGCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAGCAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment