Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BATR1942_RS19890 Genome accession   NC_014639
Coordinates   4067017..4067967 (+) Length   316 a.a.
NCBI ID   WP_004430268.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4062017..4072967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS21150 - 4062905..4063114 (+) 210 Protein_4039 ATP-binding protein -
  BATR1942_RS19875 (BATR1942_20585) rapC 4063309..4064457 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  BATR1942_RS19880 (BATR1942_20590) phrC 4064441..4064560 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BATR1942_RS21155 - 4064695..4064802 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  BATR1942_RS21160 - 4065006..4065089 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  BATR1942_RS19885 (BATR1942_20595) - 4065220..4066584 (-) 1365 WP_004430267.1 aspartate kinase -
  BATR1942_RS19890 (BATR1942_20600) ceuB 4067017..4067967 (+) 951 WP_004430268.1 ABC transporter permease Machinery gene
  BATR1942_RS19895 (BATR1942_20605) - 4067960..4068907 (+) 948 WP_004430269.1 iron chelate uptake ABC transporter family permease subunit -
  BATR1942_RS19900 (BATR1942_20610) yclP 4068901..4069659 (+) 759 WP_004430271.1 petrobactin ABC transporter ATP-binding protein YclP -
  BATR1942_RS19905 (BATR1942_20615) - 4069681..4070634 (+) 954 WP_004430274.1 siderophore ABC transporter substrate-binding protein -
  BATR1942_RS19910 (BATR1942_20620) - 4070925..4072343 (-) 1419 WP_004430277.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34939.49 Da        Isoelectric Point: 9.8612

>NTDB_id=38819 BATR1942_RS19890 WP_004430268.1 4067017..4067967(+) (ceuB) [Bacillus atrophaeus 1942]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYKGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGIIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=38819 BATR1942_RS19890 WP_004430268.1 4067017..4067967(+) (ceuB) [Bacillus atrophaeus 1942]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCGTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCCTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTGATAATCGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCCGTCAACCTTGGCC
TGAAATATAAACGGATTGTGAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTAATCATTCCGAATATCGTATCCATTTACAAGGGAGACAACCTGAAAAGCAGCCTGCCCCACAC
AGCTCTTTTAGGCGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATCATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTATATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment