Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | F3129_RS12235 | Genome accession | NZ_CP044133 |
| Coordinates | 2524609..2525646 (-) | Length | 345 a.a. |
| NCBI ID | WP_150941312.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain FJAT-46737 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2519609..2530646
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3129_RS12185 (F3129_12185) | tasA | 2519843..2520628 (-) | 786 | WP_150941309.1 | biofilm matrix protein TasA | - |
| F3129_RS12190 (F3129_12190) | sipW | 2520693..2521277 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| F3129_RS12195 (F3129_12195) | tapA | 2521249..2521920 (-) | 672 | WP_150941310.1 | amyloid fiber anchoring/assembly protein TapA | - |
| F3129_RS12200 (F3129_12200) | - | 2522179..2522508 (+) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| F3129_RS12205 (F3129_12205) | - | 2522548..2522727 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| F3129_RS12210 (F3129_12210) | comGG | 2522784..2523161 (-) | 378 | WP_150941311.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| F3129_RS12215 (F3129_12215) | comGF | 2523162..2523662 (-) | 501 | WP_256994853.1 | competence type IV pilus minor pilin ComGF | - |
| F3129_RS12220 (F3129_12220) | comGE | 2523571..2523885 (-) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| F3129_RS12225 (F3129_12225) | comGD | 2523869..2524306 (-) | 438 | WP_015240210.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| F3129_RS12230 (F3129_12230) | comGC | 2524296..2524604 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| F3129_RS12235 (F3129_12235) | comGB | 2524609..2525646 (-) | 1038 | WP_150941312.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| F3129_RS12240 (F3129_12240) | comGA | 2525633..2526703 (-) | 1071 | WP_150941313.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| F3129_RS12245 (F3129_12245) | - | 2526896..2527846 (-) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| F3129_RS12250 (F3129_12250) | - | 2527992..2529293 (+) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| F3129_RS12255 (F3129_12255) | - | 2529331..2530161 (-) | 831 | WP_015240214.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39515.76 Da Isoelectric Point: 9.5038
>NTDB_id=388179 F3129_RS12235 WP_150941312.1 2524609..2525646(-) (comGB) [Bacillus velezensis strain FJAT-46737]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQTLIIPQFSGIYQSMNMNTSGATAFIFAFF
GHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLQLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQTLIIPQFSGIYQSMNMNTSGATAFIFAFF
GHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=388179 F3129_RS12235 WP_150941312.1 2524609..2525646(-) (comGB) [Bacillus velezensis strain FJAT-46737]
ATGAAGCGGATTAAACGAACCTGGCCCTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGGCTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGCGTCATGTTTTATATCCTGCAAACTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
GGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTATGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCGATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCCTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGGCTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGCGTCATGTTTTATATCCTGCAAACTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
GGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTATGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTATCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCGATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.944 |
93.623 |
0.617 |