Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   F3129_RS01785 Genome accession   NZ_CP044133
Coordinates   331913..332350 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326913..337350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS01760 (F3129_01760) - 327932..329068 (+) 1137 WP_072588780.1 zinc-dependent alcohol dehydrogenase -
  F3129_RS01765 (F3129_01765) - 329083..329517 (+) 435 WP_007409358.1 RDD family protein -
  F3129_RS01770 (F3129_01770) - 329635..329913 (+) 279 WP_263612330.1 YckD family protein -
  F3129_RS01775 (F3129_01775) - 330017..331453 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  F3129_RS01780 (F3129_01780) nin/comJ 331494..331892 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  F3129_RS01785 (F3129_01785) nucA/comI 331913..332350 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F3129_RS01790 (F3129_01790) hxlB 332708..333265 (-) 558 WP_150940979.1 6-phospho-3-hexuloisomerase -
  F3129_RS01795 (F3129_01795) hxlA 333262..333897 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  F3129_RS01800 (F3129_01800) - 334129..334491 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=388142 F3129_RS01785 WP_003156588.1 331913..332350(-) (nucA/comI) [Bacillus velezensis strain FJAT-46737]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=388142 F3129_RS01785 WP_003156588.1 331913..332350(-) (nucA/comI) [Bacillus velezensis strain FJAT-46737]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment