Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FOB68_RS03305 Genome accession   NZ_CP044106
Coordinates   595175..595861 (+) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_660     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590175..600861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB68_RS03270 (FOB68_03275) yqeH 590702..591802 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  FOB68_RS03275 (FOB68_03280) aroE 591816..592622 (+) 807 WP_000666767.1 shikimate dehydrogenase -
  FOB68_RS03280 (FOB68_03285) yhbY 592626..592916 (+) 291 WP_000955233.1 ribosome assembly RNA-binding protein YhbY -
  FOB68_RS03285 (FOB68_03290) nadD 592919..593488 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  FOB68_RS03290 (FOB68_03295) yqeK 593478..594062 (+) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FOB68_RS03295 (FOB68_03300) rsfS 594063..594416 (+) 354 WP_001088020.1 ribosome silencing factor -
  FOB68_RS03300 (FOB68_03305) - 594419..595135 (+) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  FOB68_RS03305 (FOB68_03310) comEA 595175..595861 (+) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  FOB68_RS03310 (FOB68_03315) - 595953..596414 (+) 462 WP_000439693.1 ComE operon protein 2 -
  FOB68_RS03315 (FOB68_03320) comEC 596419..598620 (+) 2202 WP_000967503.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOB68_RS03320 (FOB68_03325) holA 598677..599651 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  FOB68_RS03325 (FOB68_03330) rpsT 599696..599947 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=387913 FOB68_RS03305 WP_078055782.1 595175..595861(+) (comEA) [Staphylococcus aureus strain FDAARGOS_660]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=387913 FOB68_RS03305 WP_078055782.1 595175..595861(+) (comEA) [Staphylococcus aureus strain FDAARGOS_660]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment