Detailed information
Bioinformatically predicted
Overview
| Name | luxS | Type | Regulator |
| Locus tag | HHJ43_RS05940 | Genome accession | NZ_CP051751 |
| Coordinates | 1258994..1259509 (+) | Length | 171 a.a. |
| NCBI ID | WP_001130208.1 | Uniprot ID | Q8FEP8 |
| Organism | Escherichia coli strain SCU-301 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1253994..1264509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ43_RS05895 (HHJ43_05900) | csrA | 1254873..1255058 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| HHJ43_RS05925 (HHJ43_05930) | yqaB | 1256224..1256790 (+) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| HHJ43_RS05930 (HHJ43_05935) | yqaA | 1256787..1257215 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| HHJ43_RS05935 (HHJ43_05940) | gshA | 1257288..1258844 (+) | 1557 | WP_001551535.1 | glutamate--cysteine ligase | - |
| HHJ43_RS05940 (HHJ43_05945) | luxS | 1258994..1259509 (+) | 516 | WP_001130208.1 | S-ribosylhomocysteine lyase | Regulator |
| HHJ43_RS05945 (HHJ43_05950) | - | 1259558..1260670 (-) | 1113 | WP_096944373.1 | ATP-binding protein | - |
| HHJ43_RS05950 (HHJ43_05955) | - | 1260667..1261374 (-) | 708 | WP_096944372.1 | RNA ligase family protein | - |
| HHJ43_RS05955 (HHJ43_05960) | emrB | 1261632..1263170 (-) | 1539 | WP_001296316.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| HHJ43_RS05960 (HHJ43_05965) | emrA | 1263187..1264359 (-) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19443.21 Da Isoelectric Point: 5.0362
>NTDB_id=387913 HHJ43_RS05940 WP_001130208.1 1258994..1259509(+) (luxS) [Escherichia coli strain SCU-301]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI
Nucleotide
Download Length: 516 bp
>NTDB_id=387913 HHJ43_RS05940 WP_001130208.1 1258994..1259509(+) (luxS) [Escherichia coli strain SCU-301]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxS | Vibrio cholerae strain A1552 |
73.684 |
100 |
0.737 |