Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   FOB62_RS06225 Genome accession   NZ_CP044102
Coordinates   1210523..1212967 (+) Length   814 a.a.
NCBI ID   WP_003054754.1    Uniprot ID   A0AAE9QRS9
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1163944..1215096 1210523..1212967 within 0


Gene organization within MGE regions


Location: 1163944..1215096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS05890 (FOB62_05890) - 1163944..1165017 (-) 1074 WP_138128250.1 site-specific integrase -
  FOB62_RS05895 (FOB62_05895) - 1165134..1166027 (-) 894 WP_000426896.1 P63C domain-containing protein -
  FOB62_RS05900 (FOB62_05900) - 1166063..1166896 (-) 834 WP_138128248.1 helix-turn-helix transcriptional regulator -
  FOB62_RS11250 - 1167251..1167400 (+) 150 WP_172601652.1 hypothetical protein -
  FOB62_RS05905 (FOB62_05905) - 1167397..1167597 (-) 201 WP_138128246.1 KTSC domain-containing protein -
  FOB62_RS05910 (FOB62_05910) - 1167655..1167813 (+) 159 WP_138128244.1 hypothetical protein -
  FOB62_RS05915 (FOB62_05915) - 1167847..1168056 (+) 210 WP_138128241.1 hypothetical protein -
  FOB62_RS05920 (FOB62_05920) - 1168032..1168724 (-) 693 WP_138128239.1 DUF4145 domain-containing protein -
  FOB62_RS05925 (FOB62_05925) - 1168777..1168977 (+) 201 WP_038433319.1 helix-turn-helix transcriptional regulator -
  FOB62_RS05930 (FOB62_05930) - 1169008..1169736 (+) 729 WP_138128237.1 phage antirepressor KilAC domain-containing protein -
  FOB62_RS11255 - 1169768..1169908 (+) 141 WP_003051781.1 hypothetical protein -
  FOB62_RS05935 (FOB62_05935) - 1169888..1170262 (-) 375 WP_023610946.1 DUF2513 domain-containing protein -
  FOB62_RS11560 - 1170313..1170444 (+) 132 WP_002984298.1 hypothetical protein -
  FOB62_RS05940 (FOB62_05940) - 1170430..1170648 (-) 219 WP_032467270.1 hypothetical protein -
  FOB62_RS05945 (FOB62_05945) - 1170791..1170976 (+) 186 WP_021340658.1 helix-turn-helix transcriptional regulator -
  FOB62_RS05950 (FOB62_05950) - 1171034..1171309 (+) 276 WP_138128235.1 DNA-binding protein -
  FOB62_RS05955 (FOB62_05955) - 1171306..1171491 (+) 186 WP_150336231.1 hypothetical protein -
  FOB62_RS05960 (FOB62_05960) - 1171585..1171842 (+) 258 WP_111679491.1 transcriptional regulator -
  FOB62_RS05965 (FOB62_05965) - 1171964..1172374 (+) 411 WP_190847655.1 DnaD domain protein -
  FOB62_RS05970 (FOB62_05970) - 1172355..1172573 (+) 219 WP_136112612.1 hypothetical protein -
  FOB62_RS05975 (FOB62_05975) - 1172585..1172725 (+) 141 WP_011017992.1 hypothetical protein -
  FOB62_RS05980 (FOB62_05980) - 1172736..1172990 (+) 255 WP_138128229.1 hypothetical protein -
  FOB62_RS11660 (FOB62_05985) - 1172993..1173175 (+) 183 WP_138128227.1 hypothetical protein -
  FOB62_RS05990 (FOB62_05990) - 1173172..1174146 (+) 975 WP_138128225.1 RecT family recombinase -
  FOB62_RS05995 (FOB62_05995) - 1174143..1174940 (+) 798 WP_138128223.1 PD-(D/E)XK nuclease-like domain-containing protein -
  FOB62_RS11260 - 1174950..1175117 (+) 168 WP_172601651.1 hypothetical protein -
  FOB62_RS06000 (FOB62_06000) - 1175294..1175629 (+) 336 WP_138128221.1 hypothetical protein -
  FOB62_RS06005 (FOB62_06005) - 1175626..1176138 (+) 513 WP_138128219.1 crossover junction endodeoxyribonuclease RuvC -
  FOB62_RS06010 (FOB62_06010) - 1176125..1176319 (+) 195 WP_138128217.1 hypothetical protein -
  FOB62_RS06015 (FOB62_06015) - 1176316..1176705 (+) 390 WP_138128215.1 YopX family protein -
  FOB62_RS06020 (FOB62_06020) - 1176702..1176878 (+) 177 WP_032460883.1 hypothetical protein -
  FOB62_RS06025 (FOB62_06025) - 1176878..1177147 (+) 270 WP_172601656.1 hypothetical protein -
  FOB62_RS06030 (FOB62_06030) - 1177150..1178070 (+) 921 WP_138128211.1 N-6 DNA methylase -
  FOB62_RS06035 (FOB62_06035) - 1178067..1178294 (+) 228 WP_138083799.1 hypothetical protein -
  FOB62_RS06040 (FOB62_06040) - 1178296..1178535 (+) 240 WP_138083800.1 hypothetical protein -
  FOB62_RS06045 (FOB62_06045) - 1178637..1179188 (+) 552 WP_138128209.1 DUF1642 domain-containing protein -
  FOB62_RS11265 - 1179185..1179355 (+) 171 WP_002987493.1 hypothetical protein -
  FOB62_RS06050 (FOB62_06050) - 1179717..1180154 (+) 438 WP_003052405.1 DUF1492 domain-containing protein -
  FOB62_RS06060 (FOB62_06060) - 1180864..1181340 (+) 477 WP_150336232.1 terminase small subunit -
  FOB62_RS06065 (FOB62_06065) - 1181343..1182629 (+) 1287 WP_281429830.1 PBSX family phage terminase large subunit -
  FOB62_RS06070 (FOB62_06070) - 1182643..1184145 (+) 1503 WP_111711578.1 phage portal protein -
  FOB62_RS06075 (FOB62_06075) - 1184150..1185646 (+) 1497 WP_150336233.1 phage minor capsid protein -
  FOB62_RS06080 (FOB62_06080) - 1185643..1185870 (+) 228 WP_111679809.1 hypothetical protein -
  FOB62_RS06085 (FOB62_06085) - 1185944..1186210 (+) 267 WP_115283414.1 hypothetical protein -
  FOB62_RS06090 (FOB62_06090) - 1186348..1186962 (+) 615 WP_111711580.1 hypothetical protein -
  FOB62_RS06095 (FOB62_06095) - 1186966..1187784 (+) 819 WP_111679812.1 N4-gp56 family major capsid protein -
  FOB62_RS06100 (FOB62_06100) - 1187838..1188254 (+) 417 WP_111679813.1 hypothetical protein -
  FOB62_RS06105 (FOB62_06105) - 1188244..1188576 (+) 333 WP_111679814.1 minor capsid protein -
  FOB62_RS06110 (FOB62_06110) - 1188576..1188932 (+) 357 WP_065361215.1 minor capsid protein -
  FOB62_RS06115 (FOB62_06115) - 1188929..1189327 (+) 399 WP_138128207.1 minor capsid protein -
  FOB62_RS06120 (FOB62_06120) - 1189327..1189791 (+) 465 WP_138128205.1 phage tail protein -
  FOB62_RS06125 (FOB62_06125) - 1189835..1190269 (+) 435 WP_010922086.1 hypothetical protein -
  FOB62_RS06130 (FOB62_06130) - 1190273..1190854 (+) 582 WP_138128203.1 bacteriophage Gp15 family protein -
  FOB62_RS06135 (FOB62_06135) - 1190844..1194104 (+) 3261 WP_138128276.1 tape measure protein -
  FOB62_RS06140 (FOB62_06140) - 1194101..1194817 (+) 717 WP_138128200.1 distal tail protein Dit -
  FOB62_RS06145 (FOB62_06145) - 1194814..1196958 (+) 2145 WP_138128198.1 phage tail spike protein -
  FOB62_RS06150 (FOB62_06150) - 1196955..1198010 (+) 1056 WP_138128196.1 hyaluronoglucosaminidase -
  FOB62_RS06155 (FOB62_06155) - 1198010..1198645 (+) 636 WP_138128194.1 hypothetical protein -
  FOB62_RS06160 (FOB62_06160) - 1198656..1200674 (+) 2019 WP_138128192.1 gp58-like family protein -
  FOB62_RS06165 (FOB62_06165) - 1200687..1201118 (+) 432 WP_138128190.1 DUF1617 family protein -
  FOB62_RS06170 (FOB62_06170) - 1201121..1201729 (+) 609 WP_138128188.1 hypothetical protein -
  FOB62_RS06175 (FOB62_06175) - 1201740..1202039 (+) 300 WP_023077839.1 hypothetical protein -
  FOB62_RS06180 (FOB62_06180) - 1202036..1202221 (+) 186 WP_011184796.1 holin -
  FOB62_RS06185 (FOB62_06185) - 1202332..1203546 (+) 1215 WP_138128186.1 peptidoglycan amidohydrolase family protein -
  FOB62_RS06190 (FOB62_06190) - 1203840..1204820 (+) 981 WP_138128184.1 Abi family protein -
  FOB62_RS06195 (FOB62_06195) - 1204987..1206144 (-) 1158 WP_138128182.1 DNA/RNA non-specific endonuclease -
  FOB62_RS06200 (FOB62_06200) prx 1206383..1206565 (+) 183 WP_138128179.1 Paratox Regulator
  FOB62_RS06205 (FOB62_06205) - 1206798..1208290 (+) 1493 Protein_1194 IS1182 family transposase -
  FOB62_RS11400 - 1208556..1209104 (-) 549 WP_003054749.1 amidohydrolase family protein -
  FOB62_RS06215 (FOB62_06215) - 1209663..1209866 (+) 204 WP_003053018.1 cold-shock protein -
  FOB62_RS06220 (FOB62_06220) - 1210062..1210523 (+) 462 WP_003054759.1 CtsR family transcriptional regulator -
  FOB62_RS06225 (FOB62_06225) clpC 1210523..1212967 (+) 2445 WP_003054754.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FOB62_RS06230 (FOB62_06230) groES 1213145..1213435 (+) 291 WP_003054738.1 co-chaperone GroES -
  FOB62_RS06235 (FOB62_06235) groL 1213471..1215096 (+) 1626 WP_003054752.1 chaperonin GroEL -

Sequence


Protein


Download         Length: 814 a.a.        Molecular weight: 90381.04 Da        Isoelectric Point: 6.7391

>NTDB_id=387881 FOB62_RS06225 WP_003054754.1 1210523..1212967(+) (clpC) [Streptococcus dysgalactiae strain FDAARGOS_654]
MIMYSLKMQEIFRQAQFQAARFDSQYLETWHILLAMARVDHSLAGLVLSEFDAKVAVEEYEAAAILAMGKSPKYQVSHID
FRPQSKTLTNLLQFAQAISQVTKDQEVGSEHVLFAILLNPDIMATRLLEMAGYTIKDKGNGEPRLADLRKAIEIHAGYSK
EIIKAIHELRKPKKTKNQGSFSDMMKPPSTAGDLADFTRDLTEMASQGLLEPVIGRDAEVSRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIESDGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPNVEDAYQILLGLKGSYETYHNVTIAN
QAVRTAVKMAHRYLTSKNLPDSAIDLLDEASATVQGMVKKSRPEIITPLDQALIDGDMKKASRLLAKDVKGQHRKPTAVT
EEDILTTLSKLSGIPLEKLSQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKGISHDHQAMEKRILEELKKAYRPEFINRIDEKVVFH
SLTQDNMREVVKIMVQPLMATLAEKGITLKFQPMALKYLSEEGYDVEMGARPLRRTLQTQVEDKLSELILAGELASGHTL
KIGLSHGKLSFNLE

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=387881 FOB62_RS06225 WP_003054754.1 1210523..1212967(+) (clpC) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGATCATGTATTCATTGAAGATGCAAGAAATTTTCAGGCAGGCGCAGTTTCAAGCAGCCCGCTTTGATAGCCAATACCT
AGAAACTTGGCATATATTGCTAGCTATGGCGAGGGTTGACCACTCCCTAGCGGGTTTGGTTCTAAGCGAATTTGATGCTA
AGGTTGCAGTGGAAGAATATGAGGCTGCAGCTATTTTAGCGATGGGCAAAAGTCCTAAATACCAAGTGTCTCACATTGAC
TTTAGGCCTCAGTCAAAAACCTTAACGAACCTTTTGCAATTTGCCCAAGCTATCAGTCAAGTCACCAAAGACCAAGAGGT
AGGTTCAGAGCATGTTCTCTTTGCCATTTTGCTTAATCCAGATATTATGGCTACTCGCTTATTAGAGATGGCGGGTTATA
CTATCAAGGATAAAGGAAACGGGGAGCCTCGCTTAGCTGATTTACGAAAAGCTATCGAGATTCATGCAGGCTATAGCAAG
GAAATAATTAAGGCTATCCACGAGTTGCGTAAGCCAAAGAAAACCAAAAATCAAGGTTCTTTTTCAGACATGATGAAGCC
ACCAAGCACGGCTGGGGACTTGGCGGACTTTACACGTGATTTGACCGAGATGGCAAGCCAAGGTCTCTTAGAGCCAGTTA
TTGGCCGTGATGCTGAAGTGTCACGGATGATTCAAGTACTGAGTCGTAAAACAAAGAATAACCCTGTTCTTGTGGGTGAT
GCAGGTGTGGGTAAAACGGCCCTTGCCTACGGCCTAGCCCAACGTATTGCTAATGGTGCTATTCCTTATGAGCTGCAAGA
CATGCGTGTTCTAGAATTAGACATGATGAGTGTTGTTGCGGGGACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATC
AAATCATTGACGATATTGAGTCAGATGGCAAAATTATTCTCTTCGTAGATGAATTGCACACCATTATGGGATCAGGAAGT
GGTATTGATAGCACGCTTGATGCTGCCAATATTTTAAAACCAGCCTTATCTCGTGGAACCCTCCATATGGTGGGTGCAAC
AACGCAGGAAGAATACCAAAAACACATTGAAAAAGATGCCGCTCTTTCGCGCCGCTTTGCTAAGATTTTAATTGAAGAAC
CTAATGTAGAAGATGCTTATCAGATTCTGCTAGGACTAAAAGGCTCTTACGAGACTTACCATAATGTGACCATTGCTAAT
CAGGCTGTTAGAACCGCTGTGAAAATGGCACATCGCTATCTGACCAGCAAAAACCTTCCGGATTCTGCCATTGATTTGTT
GGATGAAGCCAGTGCTACAGTGCAAGGTATGGTTAAAAAATCTAGGCCAGAAATCATCACGCCATTAGATCAAGCTTTGA
TTGATGGCGATATGAAGAAGGCCTCTCGTTTGTTGGCAAAAGACGTTAAAGGGCAACATCGCAAGCCAACAGCTGTGACA
GAAGAGGACATCCTGACGACCTTGAGCAAGCTATCAGGTATTCCACTGGAAAAACTCAGCCAAGCTGATAGCAAAAAATA
CCTTAATTTGGAAAAAGAACTGCATAAGCGCGTGATTGGGCAAGAAGATGCTGTCTCAGCTATTTCTAGAGCCATTCGCC
GTAATCAGTCAGGCATTCGTACAGGTAAACGTCCAATCGGTTCTTTCATGTTCCTTGGTCCAACAGGGGTTGGTAAGACC
GAGTTGGCAAAAGCCTTGGCAGAAGTTCTCTTTGATGACGCGTCCGCCCTTATCCGCTTTGATATGTCAGAGTATATGGA
GAAATTTGCGGCTTCTCGCCTTAATGGCGCACCTCCAGGCTATGTTGGTTACGATGAAGGTGGTGAATTAACAGAGAAGG
TCAGAAACAAGCCTTATTCTGTGCTCCTCTTTGACGAGGTGGAAAAAGCTCACCCTGATATTTTCAACGTCCTCTTACAA
GTGCTTGATGATGGCATGTTGACAGATAGCCGTGGGCGTAAAGTGGACTTCTCAAATACCATTATTATCATGACAAGTAA
TCTAGGGGCAACAGCTCTGCGTGATGATAAAACAGTTGGCTTTGGGGCAAAAGGCATTAGCCATGACCACCAAGCCATGG
AAAAACGGATTTTGGAAGAGTTGAAAAAAGCTTACCGACCAGAATTTATCAACCGAATTGATGAAAAGGTTGTCTTCCAC
AGCCTCACTCAGGACAATATGAGAGAAGTAGTCAAGATTATGGTGCAGCCGTTGATGGCTACTTTGGCAGAAAAAGGCAT
TACCCTCAAATTCCAGCCAATGGCCCTCAAGTATTTATCAGAAGAAGGGTATGATGTGGAAATGGGTGCTCGTCCATTAC
GCCGCACTTTGCAAACTCAGGTGGAAGATAAATTGTCTGAATTGATTCTTGCTGGTGAATTGGCAAGTGGTCATACCCTG
AAAATTGGCCTTTCTCATGGAAAACTCAGCTTTAACCTTGAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

76.507

99.877

0.764

  clpC Streptococcus thermophilus LMD-9

72.794

100

0.73

  clpC Streptococcus thermophilus LMG 18311

72.794

100

0.73

  clpC Streptococcus pneumoniae TIGR4

67.159

99.877

0.671

  clpC Streptococcus pneumoniae Rx1

67.159

99.877

0.671

  clpC Streptococcus pneumoniae D39

67.159

99.877

0.671

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.681

100

0.499

  clpC Bacillus subtilis subsp. subtilis str. 168

42.84

100

0.437


Multiple sequence alignment