Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   BATR1942_RS03200 Genome accession   NC_014639
Coordinates   671666..672619 (+) Length   317 a.a.
NCBI ID   WP_013390469.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 666666..677619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS03175 (BATR1942_03255) argF 668470..669440 (+) 971 Protein_634 ornithine carbamoyltransferase -
  BATR1942_RS03180 (BATR1942_03260) - 669522..669701 (+) 180 WP_003327605.1 YjzC family protein -
  BATR1942_RS03185 (BATR1942_03265) - 669731..669919 (-) 189 WP_003327604.1 YjzD family protein -
  BATR1942_RS03190 (BATR1942_03270) - 670179..670913 (+) 735 WP_003327603.1 hypothetical protein -
  BATR1942_RS03195 (BATR1942_03275) - 671001..671576 (+) 576 WP_003327602.1 hypothetical protein -
  BATR1942_RS03200 (BATR1942_03280) med 671666..672619 (+) 954 WP_013390469.1 BMP family ABC transporter substrate-binding protein Regulator
  BATR1942_RS03205 (BATR1942_03285) comZ 672634..672825 (+) 192 WP_003327599.1 ComZ family protein Regulator
  BATR1942_RS03210 (BATR1942_03290) - 672855..673082 (-) 228 WP_003327598.1 hypothetical protein -
  BATR1942_RS03215 (BATR1942_03295) fabH 673254..674192 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  BATR1942_RS03220 (BATR1942_03300) fabF 674214..675452 (+) 1239 WP_003327596.1 beta-ketoacyl-ACP synthase II -
  BATR1942_RS03225 (BATR1942_03305) - 675530..676315 (+) 786 WP_003327595.1 DUF2268 domain-containing protein -
  BATR1942_RS03230 - 676505..677490 (+) 986 Protein_645 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35399.84 Da        Isoelectric Point: 4.4404

>NTDB_id=38751 BATR1942_RS03200 WP_013390469.1 671666..672619(+) (med) [Bacillus atrophaeus 1942]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGINLLFGHGSEYEEMFNLVSEDYPDMEFVISNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDQ
GENTVLTSTVQNVDKAYGIIAEQYSKGTLESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNQTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=38751 BATR1942_RS03200 WP_013390469.1 671666..672619(+) (med) [Bacillus atrophaeus 1942]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACCATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTACTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCACAAGAGAGGGATAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCGGACATGGAATTTGTCATTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAACGGAGAAGCGA
TGGGGTTTTTCGGCGGGATGACAGCCGCACATATGTCCAAAACCAATCAAATCGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAGTATGAAAATCCGGACATCACTATCAATACGAAATATACAGACCACTG
GGATGACGATACCACAGCCGTGAAGCTTTATGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTTACAGACCAGTCTGATCAG
GGCGAAAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAAGGG
CACTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTTGTCGACA
AAGCCTTCCAAGATAAAATTGCCGCTCTTATCAAAACGTATAATCAAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

87.697

100

0.877

Multiple sequence alignment