Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FOB65_RS23460 Genome accession   NZ_CP044074
Coordinates   4742453..4742860 (+) Length   135 a.a.
NCBI ID   WP_007161679.1    Uniprot ID   A0AAX3KW86
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4737453..4747860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS23430 (FOB65_23430) - 4737700..4738698 (-) 999 WP_007161673.1 aspartate carbamoyltransferase catalytic subunit -
  FOB65_RS23435 (FOB65_23435) pyrR 4738714..4739223 (-) 510 WP_027598880.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  FOB65_RS23440 (FOB65_23440) ruvX 4739226..4739678 (-) 453 WP_027598879.1 Holliday junction resolvase RuvX -
  FOB65_RS23445 (FOB65_23445) - 4739675..4740244 (-) 570 WP_007161676.1 YqgE/AlgH family protein -
  FOB65_RS23450 (FOB65_23450) - 4740300..4741178 (-) 879 WP_007161677.1 energy transducer TonB -
  FOB65_RS23455 (FOB65_23455) gshB 4741282..4742232 (-) 951 WP_074584087.1 glutathione synthase -
  FOB65_RS23460 (FOB65_23460) pilG 4742453..4742860 (+) 408 WP_007161679.1 twitching motility response regulator PilG Regulator
  FOB65_RS23465 (FOB65_23465) pilH 4742901..4743266 (+) 366 WP_007161680.1 twitching motility response regulator PilH -
  FOB65_RS23470 (FOB65_23470) - 4743316..4743852 (+) 537 WP_007161681.1 chemotaxis protein CheW -
  FOB65_RS23475 (FOB65_23475) - 4744014..4746044 (+) 2031 WP_027598875.1 methyl-accepting chemotaxis protein -
  FOB65_RS23480 (FOB65_23480) - 4746106..4746954 (+) 849 WP_081347946.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14917.33 Da        Isoelectric Point: 7.2433

>NTDB_id=387479 FOB65_RS23460 WP_007161679.1 4742453..4742860(+) (pilG) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MEQYSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAIDGFDALAKIADSHPHIIFVDIMMPRLDGYQTCALIKNNSAFR
ATPVIMLSSRDGLFDKAKGRIVGSDQYLTKPFSKEELIGAIKTHVPSFTPLEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=387479 FOB65_RS23460 WP_007161679.1 4742453..4742860(+) (pilG) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGAACAGTATTCGGAAGGGCTGAAGGTCATGGTGATCGACGACTCGAAGACGATTCGTCGGACCGCCGAGACCCTGCT
CAAGAAAGTTGGCTGCGAGGTCATCACCGCCATCGATGGATTCGATGCGCTCGCCAAGATCGCCGATAGTCACCCCCACA
TCATCTTCGTGGACATCATGATGCCGCGACTGGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCCTTCCGC
GCGACGCCCGTCATCATGCTGTCCTCCCGTGACGGGCTCTTCGACAAGGCCAAGGGCCGCATCGTCGGCTCTGACCAGTA
CCTCACCAAACCCTTCAGCAAAGAAGAGCTGATCGGTGCGATCAAGACCCACGTCCCCAGTTTCACTCCGCTCGAACAAG
CGTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.016

94.074

0.696
  vicR Streptococcus mutans UA159

39.683

93.333

0.37

Multiple sequence alignment