Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBPR_RS10030 Genome accession   NC_014638
Coordinates   228653..230593 (+) Length   646 a.a.
NCBI ID   WP_047289830.1    Uniprot ID   -
Organism   Bifidobacterium bifidum PRL2010     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 223653..235593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBPR_RS09600 - 223708..223863 (+) 156 WP_020372719.1 LPXTG cell wall anchor domain-containing protein -
  BBPR_RS00955 (BBPR_0188) - 224099..225091 (+) 993 WP_017143196.1 aldo/keto reductase -
  BBPR_RS00965 (BBPR_0189) - 225478..225765 (-) 288 WP_003811585.1 DUF1778 domain-containing protein -
  BBPR_RS00970 (BBPR_0190) - 225970..226500 (+) 531 WP_003811587.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBPR_RS00975 (BBPR_0191) rcrP 226719..228602 (+) 1884 WP_013389447.1 ABC transporter ATP-binding protein Regulator
  BBPR_RS10030 (BBPR_0192) rcrQ 228653..230593 (+) 1941 WP_047289830.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70400.16 Da        Isoelectric Point: 6.5754

>NTDB_id=38742 BBPR_RS10030 WP_047289830.1 228653..230593(+) (rcrQ) [Bifidobacterium bifidum PRL2010]
MGGGRTVEKPANFGNVMGKLVHYCRNYLPVIIIALVLGAVGTICQIIGPDKLKDMTNEIVKGLPAVVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLAHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPGKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=38742 BBPR_RS10030 WP_047289830.1 228653..230593(+) (rcrQ) [Bifidobacterium bifidum PRL2010]
ATGGGCGGCGGCCGCACGGTCGAAAAGCCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCCACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGTCGGCACGATATGCCAGATCATCGGACCGGACAAGCTCAAGG
ACATGACCAACGAGATCGTCAAGGGACTGCCGGCCGTCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGATGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATCACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGTCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTCGAGAAGTACAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGCCT
GATGATGCCGCTGATGAACTTCGTCGGCAACTTCGGCTACGTGATCGTGTGCGTGGTCGGTGCGGCGCTCGCCATGGACG
GGAAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCCGCGAGCACGGCACGGACGGACAGCGGCAAGCTGGCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGACGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGGCAAGCCGATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCAGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGTTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGCTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(32-315)

ABC transporter (ABC_tran)

(424-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.397

97.368

0.491

Multiple sequence alignment