Detailed information NTG0387399

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ29_RS05435
• Genome accession: NZ_CP051725
• Coordinates: 1143806..1144798 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-112
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1138806..1149798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ29_RS05405 (HHJ29_05405)	ispD	1138867..1139577 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ29_RS05410 (HHJ29_05410)	ispF	1139577..1140056 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ29_RS05415 (HHJ29_05415)	truD	1140053..1141102 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HHJ29_RS05420 (HHJ29_05420)	surE	1141083..1141844 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ29_RS05425 (HHJ29_05425)	pcm	1141838..1142464 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ29_RS05430 (HHJ29_05430)	nlpD	1142649..1143743 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
HHJ29_RS05435 (HHJ29_05435)	rpoS	1143806..1144798 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ29_RS05440 (HHJ29_05440)	-	1144976..1145527 (-)	552	WP_001179443.1	flavodoxin family protein	-
HHJ29_RS05445 (HHJ29_05445)	-	1145752..1146795 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
HHJ29_RS05450 (HHJ29_05450)	ygbN	1146938..1148302 (-)	1365	WP_000104433.1	GntP family transporter	-
HHJ29_RS05455 (HHJ29_05455)	ygbM	1148391..1149167 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387399 HHJ29_RS05435 WP_000081550.1 1143806..1144798(+) (rpoS) [Escherichia coli strain SCU-112]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387399 HHJ29_RS05435 WP_000081550.1 1143806..1144798(+) (rpoS) [Escherichia coli strain SCU-112]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715