Detailed information NTG0387392

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOB71_RS21065
• Genome accession: NZ_CP044069
• Coordinates: 2830594..2831586 (-)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FDAARGOS_663
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2825594..2836586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB71_RS21045 (FOB71_21040)	recX	2825617..2826078 (-)	462	WP_038964353.1	recombination regulator RecX	-
FOB71_RS21050 (FOB71_21045)	recA	2826188..2827237 (-)	1050	WP_039470153.1	recombinase RecA	Machinery gene
FOB71_RS21055 (FOB71_21050)	pncC	2827370..2827873 (-)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
FOB71_RS21060 (FOB71_21055)	mutS	2827957..2830518 (+)	2562	WP_026050395.1	DNA mismatch repair protein MutS	-
FOB71_RS21065 (FOB71_21060)	rpoS	2830594..2831586 (-)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
FOB71_RS21070 (FOB71_21065)	-	2831667..2832563 (-)	897	WP_049797988.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOB71_RS21075 (FOB71_21070)	-	2832607..2833233 (-)	627	WP_017420276.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOB71_RS21080 (FOB71_21075)	surE	2833236..2834003 (-)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
FOB71_RS21085 (FOB71_21080)	truD	2834009..2835052 (-)	1044	WP_026050393.1	tRNA pseudouridine(13) synthase TruD	-
FOB71_RS21090 (FOB71_21085)	ispF	2835088..2835564 (-)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOB71_RS21095 (FOB71_21090)	ispD	2835561..2836274 (-)	714	WP_017420272.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FOB71_RS21100 (FOB71_21095)	ftsB	2836274..2836555 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=387392 FOB71_RS21065 WP_017420278.1 2830594..2831586(-) (rpoS) [Vibrio vulnificus strain FDAARGOS_663]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=387392 FOB71_RS21065 WP_017420278.1 2830594..2831586(-) (rpoS) [Vibrio vulnificus strain FDAARGOS_663]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTGCGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCAAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833