Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FOB72_RS04660 Genome accession   NZ_CP044065
Coordinates   1008308..1009087 (-) Length   259 a.a.
NCBI ID   WP_150371451.1    Uniprot ID   A0A5P2H0U2
Organism   Cupriavidus pauculus strain FDAARGOS_664     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003308..1014087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB72_RS04645 (FOB72_04645) - 1005013..1005717 (+) 705 WP_223851411.1 hypothetical protein -
  FOB72_RS04650 (FOB72_04650) - 1005762..1005965 (+) 204 WP_150371450.1 DUF465 domain-containing protein -
  FOB72_RS04655 (FOB72_04655) - 1006015..1008237 (+) 2223 WP_191002193.1 ATP-dependent DNA helicase -
  FOB72_RS04660 (FOB72_04660) comL 1008308..1009087 (-) 780 WP_150371451.1 outer membrane protein assembly factor BamD Machinery gene
  FOB72_RS04665 (FOB72_04665) - 1009194..1010483 (+) 1290 WP_150371452.1 RluA family pseudouridine synthase -
  FOB72_RS04670 (FOB72_04670) pgeF 1010470..1011330 (+) 861 WP_150371453.1 peptidoglycan editing factor PgeF -
  FOB72_RS04675 (FOB72_04675) - 1011366..1011584 (-) 219 WP_150371454.1 hypothetical protein -
  FOB72_RS04685 (FOB72_04685) phaC 1011843..1013936 (+) 2094 WP_223851412.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29482.91 Da        Isoelectric Point: 6.0370

>NTDB_id=387347 FOB72_RS04660 WP_150371451.1 1008308..1009087(-) (comL) [Cupriavidus pauculus strain FDAARGOS_664]
MLLAGGCVLLSACGLLGDQPDETAGWSANKLYSEAKDALDGGDYPRAVKLYEKLEGRYPFGRYAQQAQIDTAYANYRDGE
TAAALAAIDRFIQLHPSHPNIDYAYYLKGLINFNDNLGWLGRFSGQDLSERDPKAAKAAFDAFNTLVTRFPDSKYTEDAR
QRMQYIVNALAQHEVHAARYYYRRGAYLAAVNRAQQSLKEYDGAPANEEALYIMIRSYDSLGMKDLRDDTARVMEHNYPN
SDFIKYGERRKDKSWWEVF

Nucleotide


Download         Length: 780 bp        

>NTDB_id=387347 FOB72_RS04660 WP_150371451.1 1008308..1009087(-) (comL) [Cupriavidus pauculus strain FDAARGOS_664]
ATGTTGCTCGCAGGCGGCTGCGTGCTGCTGTCCGCGTGCGGCCTGCTTGGGGACCAGCCTGACGAAACGGCCGGCTGGTC
GGCCAACAAATTATATTCGGAAGCCAAGGATGCGCTCGATGGTGGCGATTATCCGCGGGCCGTCAAGCTGTACGAAAAGC
TCGAAGGACGCTATCCGTTCGGCCGATATGCGCAGCAGGCGCAGATCGACACCGCGTATGCGAACTACCGTGACGGCGAA
ACCGCCGCCGCGCTCGCCGCGATCGACCGCTTCATCCAGCTGCATCCGAGCCATCCGAACATCGATTACGCCTACTACCT
CAAGGGGCTGATCAACTTCAACGACAACCTCGGCTGGCTGGGCCGGTTCTCGGGCCAGGATCTCAGCGAACGCGATCCGA
AGGCGGCAAAGGCCGCGTTCGATGCGTTCAACACGCTCGTCACGCGCTTCCCGGACAGCAAGTACACCGAGGATGCGCGC
CAGCGCATGCAGTACATCGTCAACGCCCTCGCACAGCACGAGGTGCACGCGGCGCGCTACTACTACCGTCGCGGCGCGTA
CCTGGCCGCGGTGAACCGCGCGCAGCAGTCGCTCAAGGAATACGATGGCGCGCCCGCCAACGAGGAAGCGCTGTACATCA
TGATCCGCTCGTACGACTCGCTCGGCATGAAGGATCTGCGCGACGACACGGCACGCGTGATGGAGCACAACTATCCGAAC
AGCGACTTCATCAAGTACGGTGAGCGCCGCAAGGACAAGTCGTGGTGGGAAGTGTTCTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(28-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P2H0U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.421

100

0.494
  comL Neisseria gonorrhoeae MS11

47.49

100

0.475

Multiple sequence alignment