Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FOB75_RS15965 Genome accession   NZ_CP044062
Coordinates   3134445..3135059 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3129445..3140059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS15955 (FOB75_15955) aceF 3130735..3132621 (+) 1887 WP_150334550.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  FOB75_RS15960 (FOB75_15960) lpdA 3132890..3134317 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  FOB75_RS15965 (FOB75_15965) opaR 3134445..3135059 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  FOB75_RS15970 (FOB75_15970) hpt 3135378..3135908 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  FOB75_RS15975 (FOB75_15975) can 3135982..3136650 (-) 669 WP_005462578.1 carbonate dehydratase -
  FOB75_RS15980 (FOB75_15980) - 3136934..3138604 (+) 1671 WP_005479694.1 SulP family inorganic anion transporter -
  FOB75_RS15990 (FOB75_15990) - 3138857..3139774 (+) 918 WP_005493995.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=387316 FOB75_RS15965 WP_005479697.1 3134445..3135059(-) (opaR) [Vibrio parahaemolyticus strain FDAARGOS_667]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=387316 FOB75_RS15965 WP_005479697.1 3134445..3135059(-) (opaR) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment