Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FOB75_RS04365 Genome accession   NZ_CP044062
Coordinates   800274..801818 (-) Length   514 a.a.
NCBI ID   WP_150334233.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 795274..806818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS04345 (FOB75_04345) - 795288..796718 (-) 1431 WP_190970672.1 lipopolysaccharide biosynthesis protein -
  FOB75_RS04350 (FOB75_04350) - 796711..797883 (-) 1173 WP_150334230.1 glycosyltransferase family 4 protein -
  FOB75_RS04355 (FOB75_04355) - 797894..799078 (-) 1185 WP_150334231.1 glycosyltransferase -
  FOB75_RS04360 (FOB75_04360) - 799229..800299 (-) 1071 WP_150334232.1 glycosyltransferase family 4 protein -
  FOB75_RS04365 (FOB75_04365) luxO 800274..801818 (-) 1545 WP_150334233.1 sigma-54 dependent transcriptional regulator Regulator
  FOB75_RS04375 (FOB75_04375) - 802090..802470 (-) 381 WP_025533201.1 Hpt domain-containing protein -
  FOB75_RS04380 (FOB75_04380) - 802483..803169 (-) 687 WP_021454342.1 CpsD/CapB family tyrosine-protein kinase -
  FOB75_RS04385 (FOB75_04385) - 803169..805271 (-) 2103 WP_025520508.1 SLBB domain-containing protein -
  FOB75_RS04390 (FOB75_04390) - 805268..806170 (-) 903 WP_045607634.1 OmpA family protein -
  FOB75_RS04395 (FOB75_04395) - 806197..806517 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57378.24 Da        Isoelectric Point: 5.8567

>NTDB_id=387279 FOB75_RS04365 WP_150334233.1 800274..801818(-) (luxO) [Vibrio parahaemolyticus strain FDAARGOS_667]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLSTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSSNLNGHNAPAMQTQPVEPVQPVQEVPAQQTLPSVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=387279 FOB75_RS04365 WP_150334233.1 800274..801818(-) (luxO) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAACCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGTGTCGACTTAGCAGTAAACTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCTCGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGTCCGAGCAGCAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCGTTGAACCAGT
GCAACCTGTTCAAGAGGTGCCCGCGCAACAAACACTGCCTAGTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTAGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTAATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.499

97.082

0.481

Multiple sequence alignment