Detailed information NTG0387110

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB39_RS02225
• Genome accession: NZ_CP044033
• Coordinates: 368165..368965 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain FDAARGOS_631
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363165..373965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB39_RS02190 (FOB39_02190)	gspH	363321..363836 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
FOB39_RS02195 (FOB39_02195)	gspI	363833..364198 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FOB39_RS02200 (FOB39_02200)	gspJ	364195..364791 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
FOB39_RS02205 (FOB39_02205)	gspK	364788..365774 (+)	987	WP_143934682.1	type II secretion system minor pseudopilin GspK	-
FOB39_RS02210 (FOB39_02210)	gspL	365761..366954 (+)	1194	WP_150330808.1	type II secretion system protein GspL	-
FOB39_RS02215 (FOB39_02215)	-	366947..367432 (+)	486	WP_004151943.1	type II secretion system protein M	-
FOB39_RS02220 (FOB39_02220)	-	367422..368168 (+)	747	WP_004145897.1	type II secretion system protein N	-
FOB39_RS02225 (FOB39_02225)	pilD	368165..368965 (+)	801	WP_004213441.1	prepilin peptidase	Machinery gene
FOB39_RS02230 (FOB39_02230)	hrpB	369013..371442 (-)	2430	WP_143934683.1	ATP-dependent helicase HrpB	-
FOB39_RS02235 (FOB39_02235)	thpR	371515..372051 (+)	537	WP_085838587.1	RNA 2',3'-cyclic phosphodiesterase	-
FOB39_RS02240 (FOB39_02240)	sfsA	372051..372767 (+)	717	WP_143934684.1	DNA/RNA nuclease SfsA	-
FOB39_RS02245 (FOB39_02245)	dksA	372930..373385 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=387110 FOB39_RS02225 WP_004213441.1 368165..368965(+) (pilD) [Klebsiella pneumoniae strain FDAARGOS_631]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=387110 FOB39_RS02225 WP_004213441.1 368165..368965(+) (pilD) [Klebsiella pneumoniae strain FDAARGOS_631]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425