Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FHP22_RS01655 Genome accession   NZ_CP044018
Coordinates   346876..347736 (-) Length   286 a.a.
NCBI ID   WP_075175010.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341876..352736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS01635 (FHP22_01635) - 344142..344465 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  FHP22_RS01640 (FHP22_01640) rlmB 344571..345323 (+) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FHP22_RS01645 (FHP22_01645) - 345341..346260 (+) 920 Protein_314 DMT family transporter -
  FHP22_RS01650 (FHP22_01650) coaE 346257..346865 (-) 609 WP_005181773.1 dephospho-CoA kinase -
  FHP22_RS01655 (FHP22_01655) pilD 346876..347736 (-) 861 WP_075175010.1 prepilin peptidase Machinery gene
  FHP22_RS01660 (FHP22_01660) pilC 347736..348962 (-) 1227 WP_016659656.1 type II secretion system F family protein Machinery gene
  FHP22_RS01665 (FHP22_01665) pilB 348993..350699 (-) 1707 WP_152342179.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FHP22_RS01670 (FHP22_01670) tpiA 350989..351780 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  FHP22_RS01675 (FHP22_01675) secG 351794..352123 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32066.36 Da        Isoelectric Point: 7.8299

>NTDB_id=387055 FHP22_RS01655 WP_075175010.1 346876..347736(-) (pilD) [Acinetobacter indicus strain HY20]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIMDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=387055 FHP22_RS01655 WP_075175010.1 346876..347736(-) (pilD) [Acinetobacter indicus strain HY20]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATGGATGAAAGTAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGTCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTATTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437

Multiple sequence alignment