Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HHJ37_RS16580 Genome accession   NZ_CP051706
Coordinates   3417415..3417792 (-) Length   125 a.a.
NCBI ID   WP_000680318.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-124     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3412415..3422792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ37_RS16555 (HHJ37_16565) decR 3412870..3413328 (-) 459 WP_000884589.1 DNA-binding transcriptional regulator DecR -
  HHJ37_RS16560 (HHJ37_16570) cof 3413481..3414299 (-) 819 WP_000113027.1 HMP-PP phosphatase -
  HHJ37_RS16565 (HHJ37_16575) ybaE 3414399..3416099 (+) 1701 WP_001238258.1 SgrR family transcriptional regulator -
  HHJ37_RS16570 (HHJ37_16580) queC 3416164..3416859 (+) 696 WP_000817227.1 7-cyano-7-deazaguanine synthase QueC -
  HHJ37_RS16575 (HHJ37_16585) fadM 3416911..3417309 (-) 399 WP_001524168.1 long-chain acyl-CoA thioesterase FadM -
  HHJ37_RS16580 (HHJ37_16590) comEA 3417415..3417792 (-) 378 WP_000680318.1 helix-hairpin-helix domain-containing protein Machinery gene
  HHJ37_RS16585 (HHJ37_16595) ppiD 3417943..3419814 (-) 1872 WP_000969372.1 peptidylprolyl isomerase -
  HHJ37_RS16590 (HHJ37_16600) hupB 3420006..3420278 (-) 273 WP_001043542.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 12915.90 Da        Isoelectric Point: 8.9767

>NTDB_id=387006 HHJ37_RS16580 WP_000680318.1 3417415..3417792(-) (comEA) [Escherichia coli strain SCU-124]
MKHGIKALLITLSLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNG
VGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Nucleotide


Download         Length: 378 bp        

>NTDB_id=387006 HHJ37_RS16580 WP_000680318.1 3417415..3417792(-) (comEA) [Escherichia coli strain SCU-124]
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGTGCTCTGGC
GGCAGCTCCTGCGGCGAAACCGACAACGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTTCCGG
CGAAAGCCAGTGACGAAGAAGGCACCCGGGTCAGCATTAATAATGCCAGCGCGGAAGAGTTAGCCCGCGCGATGAATGGC
GTTGGCCTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTAAAGCA
GGTGCCGGGGATGGGCAATTCGCTGGTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(61-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

41.463

98.4

0.408
  comEA Vibrio cholerae strain A1552

41.463

98.4

0.408