Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HHJ38_RS13665 Genome accession   NZ_CP051700
Coordinates   2741033..2741509 (+) Length   158 a.a.
NCBI ID   WP_158302277.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2736033..2746509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ38_RS13635 (HHJ38_13640) - 2736563..2737495 (-) 933 WP_021538213.1 hypothetical protein -
  HHJ38_RS13640 (HHJ38_13645) - 2737602..2738486 (+) 885 WP_000010387.1 GTPase -
  HHJ38_RS13645 (HHJ38_13650) - 2738605..2739282 (+) 678 WP_001097364.1 hypothetical protein -
  HHJ38_RS13650 (HHJ38_13655) - 2739288..2739521 (+) 234 WP_021538212.1 DUF905 family protein -
  HHJ38_RS13655 (HHJ38_13660) - 2739622..2740440 (+) 819 WP_001234693.1 DUF932 domain-containing protein -
  HHJ38_RS13660 (HHJ38_13665) - 2740532..2741017 (+) 486 WP_021538211.1 antirestriction protein -
  HHJ38_RS13665 (HHJ38_13670) radC 2741033..2741509 (+) 477 WP_158302277.1 RadC family protein Machinery gene
  HHJ38_RS13670 (HHJ38_13675) - 2741572..2741793 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  HHJ38_RS13675 (HHJ38_13680) - 2741868..2742236 (+) 369 WP_021538665.1 type IV toxin-antitoxin system YeeU family antitoxin -
  HHJ38_RS13680 (HHJ38_13685) - 2742326..2742703 (+) 378 WP_000854747.1 TA system toxin CbtA family protein -
  HHJ38_RS13685 (HHJ38_13690) - 2742700..2743188 (+) 489 WP_000761667.1 DUF5983 family protein -
  HHJ38_RS13690 (HHJ38_13695) - 2743200..2743397 (+) 198 WP_000839291.1 DUF957 domain-containing protein -
  HHJ38_RS13695 (HHJ38_13700) - 2743482..2744336 (+) 855 WP_001588930.1 DUF4942 domain-containing protein -
  HHJ38_RS26680 - 2744702..2744813 (+) 112 Protein_2714 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=386895 HHJ38_RS13665 WP_158302277.1 2741033..2741509(+) (radC) [Escherichia coli strain SCU-125]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=386895 HHJ38_RS13665 WP_158302277.1 2741033..2741509(+) (radC) [Escherichia coli strain SCU-125]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment