Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F3P16_RS01960 Genome accession   NZ_CP043953
Coordinates   412879..413514 (-) Length   211 a.a.
NCBI ID   WP_049580985.1    Uniprot ID   A0A7X5LTL1
Organism   Acinetobacter baumannii strain K09-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407879..418514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS01925 (F3P16_01925) mlaE 408216..408992 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  F3P16_RS01930 (F3P16_01930) - 408992..409672 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  F3P16_RS01935 (F3P16_01935) - 409699..410340 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  F3P16_RS01940 (F3P16_01940) - 410352..410639 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  F3P16_RS01945 (F3P16_01945) - 410708..411721 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  F3P16_RS01950 (F3P16_01950) - 411879..412460 (+) 582 WP_002133678.1 TIGR00730 family Rossman fold protein -
  F3P16_RS01955 (F3P16_01955) - 412475..412876 (+) 402 WP_004839704.1 NUDIX hydrolase -
  F3P16_RS01960 (F3P16_01960) comF 412879..413514 (-) 636 WP_049580985.1 ComF family protein Machinery gene
  F3P16_RS01965 (F3P16_01965) recG 413507..415552 (-) 2046 WP_049580982.1 ATP-dependent DNA helicase RecG -
  F3P16_RS01970 (F3P16_01970) - 415573..416388 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  F3P16_RS01975 (F3P16_01975) adeT2 416468..417454 (+) 987 WP_104914795.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.69 Da        Isoelectric Point: 9.5704

>NTDB_id=386774 F3P16_RS01960 WP_049580985.1 412879..413514(-) (comF) [Acinetobacter baumannii strain K09-14]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=386774 F3P16_RS01960 WP_049580985.1 412879..413514(-) (comF) [Acinetobacter baumannii strain K09-14]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X5LTL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986

Multiple sequence alignment