Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   F3P16_RS01470 Genome accession   NZ_CP043953
Coordinates   309547..310287 (+) Length   246 a.a.
NCBI ID   WP_049581056.1    Uniprot ID   A0A0J8T5T6
Organism   Acinetobacter baumannii strain K09-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304547..315287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS01455 (F3P16_01455) ponA 305134..307689 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  F3P16_RS01460 (F3P16_01460) pilM 307851..308909 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  F3P16_RS01465 (F3P16_01465) pilN 308909..309550 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  F3P16_RS01470 (F3P16_01470) pilO 309547..310287 (+) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  F3P16_RS01475 (F3P16_01475) pilP 310298..310825 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  F3P16_RS01480 (F3P16_01480) pilQ 310893..313058 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  F3P16_RS01485 (F3P16_01485) aroK 313070..313639 (+) 570 WP_000643712.1 shikimate kinase AroK -
  F3P16_RS01490 (F3P16_01490) aroB 313668..314750 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27898.68 Da        Isoelectric Point: 4.8357

>NTDB_id=386763 F3P16_RS01470 WP_049581056.1 309547..310287(+) (pilO) [Acinetobacter baumannii strain K09-14]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTY
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=386763 F3P16_RS01470 WP_049581056.1 309547..310287(+) (pilO) [Acinetobacter baumannii strain K09-14]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCGAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGTAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8T5T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment