Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   F0161_RS05430 Genome accession   NZ_CP043939
Coordinates   1055679..1057355 (+) Length   558 a.a.
NCBI ID   WP_150203945.1    Uniprot ID   A0A5P1X1S3
Organism   Paucilactobacillus nenjiangensis strain SH-Y15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050679..1062355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0161_RS05400 (F0161_05400) - 1051036..1051899 (+) 864 WP_150203941.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase -
  F0161_RS05405 (F0161_05405) xseA 1051889..1053229 (+) 1341 WP_150203942.1 exodeoxyribonuclease VII large subunit -
  F0161_RS05410 (F0161_05410) - 1053233..1053463 (+) 231 WP_150203943.1 exodeoxyribonuclease VII small subunit -
  F0161_RS05415 (F0161_05415) - 1053466..1054356 (+) 891 WP_225423224.1 polyprenyl synthetase family protein -
  F0161_RS05420 (F0161_05420) - 1054368..1055201 (+) 834 WP_150203944.1 TlyA family RNA methyltransferase -
  F0161_RS05425 (F0161_05425) - 1055204..1055659 (+) 456 WP_137601968.1 arginine repressor -
  F0161_RS05430 (F0161_05430) recN 1055679..1057355 (+) 1677 WP_150203945.1 DNA repair protein RecN Machinery gene
  F0161_RS05435 (F0161_05435) - 1057399..1058577 (+) 1179 WP_150203946.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  F0161_RS05440 (F0161_05440) - 1058570..1059199 (+) 630 WP_137601965.1 ABC transporter permease -
  F0161_RS05445 (F0161_05445) - 1059213..1060139 (+) 927 WP_150203947.1 osmoprotectant ABC transporter substrate-binding protein -
  F0161_RS05450 (F0161_05450) - 1060139..1060798 (+) 660 WP_150203948.1 ABC transporter permease -
  F0161_RS05455 (F0161_05455) - 1060855..1061187 (-) 333 WP_137601962.1 hypothetical protein -
  F0161_RS05460 (F0161_05460) gmk 1061375..1061992 (+) 618 WP_137601961.1 guanylate kinase -
  F0161_RS05465 (F0161_05465) rpoZ 1061992..1062192 (+) 201 WP_137601960.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 62463.27 Da        Isoelectric Point: 4.3985

>NTDB_id=386681 F0161_RS05430 WP_150203945.1 1055679..1057355(+) (recN) [Paucilactobacillus nenjiangensis strain SH-Y15]
MLQELTIDNLAIIDHLSLNFSDQMTVLTGETGAGKSIIIDAVGLLVGGRGSQELIRKGTNTLKIQGQFKVASQIELDDVL
NELGVEAPDRILVVQREINRNGRNVIRVNGTLMNTTSLKRIGSRLVDIEGQNDHQLLMQPEQHLGLLDEFANKDDNLLSQ
YQETYELYQSTQRKINQKQANQQQWAQRLDMLEFQVNEIKNADLIENEDVDLQTEQERLNHFQQINNALQIVQGALSGDE
NGSSLDAIAASMESLEEISTFDDEYAKLNESVSEAYFNLQDAANEASRQLDNLSFDEGRLNEIEQRLNLIADLERKYGGS
VTEILAYYDKISTELDSMTENNVTGDELETQLDKLIAKLTKLGGKLSKNRQKAAKTIEKEIKKQLDDLYMDKAVFEIKFM
DHQPNTFYPSGIDQVEFYIQTNPGEEMGPLAKIASGGELSRVMLALKTIFARSQGVTSIIFDEVDTGVSGRVAQAIAEKI
RVIADQSQVLCITHLPQVAAMAQHHLLISKEVHDDRTITSVDELDEKSRVDELARMLAGAEVTQLTVEHAKELLNMAK

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=386681 F0161_RS05430 WP_150203945.1 1055679..1057355(+) (recN) [Paucilactobacillus nenjiangensis strain SH-Y15]
ATGCTTCAAGAATTAACAATTGATAATTTAGCAATAATCGACCATCTCTCATTAAATTTTAGTGACCAAATGACTGTTCT
TACTGGTGAAACTGGAGCTGGTAAATCAATTATTATTGATGCAGTTGGATTACTAGTAGGTGGCCGAGGATCTCAAGAAT
TAATTCGTAAGGGAACCAATACCTTAAAAATTCAAGGCCAGTTTAAAGTAGCGAGTCAAATCGAATTAGATGACGTCTTA
AATGAATTAGGGGTTGAAGCTCCTGATCGCATTTTAGTTGTTCAAAGAGAAATTAACCGCAATGGCCGTAATGTCATTCG
AGTTAATGGGACTTTAATGAATACAACATCTTTAAAACGGATTGGCTCACGTTTAGTTGACATTGAAGGCCAAAATGATC
ATCAACTATTAATGCAACCAGAACAACATTTAGGTTTGCTAGATGAATTTGCCAATAAAGATGATAATTTATTAAGTCAA
TATCAAGAAACATATGAATTATATCAATCGACCCAACGAAAAATTAATCAAAAGCAAGCTAACCAACAACAATGGGCACA
ACGTTTAGACATGTTGGAGTTTCAAGTTAATGAAATTAAAAATGCTGATTTGATTGAAAACGAAGATGTAGATTTACAAA
CTGAACAAGAACGACTCAACCATTTTCAACAAATTAATAACGCCTTGCAAATTGTTCAAGGGGCGTTATCTGGCGATGAG
AATGGTTCTTCATTAGATGCAATTGCTGCTTCAATGGAATCATTAGAAGAAATCAGTACATTTGATGATGAGTATGCTAA
GCTTAATGAAAGTGTTTCAGAGGCTTATTTTAATTTACAAGATGCAGCCAATGAAGCGAGTCGACAATTAGATAACTTAT
CATTTGACGAGGGCCGTTTGAACGAAATCGAACAACGGTTAAATTTAATTGCTGACCTAGAACGTAAGTATGGCGGCTCG
GTAACAGAGATTTTAGCGTACTATGATAAGATTTCCACTGAGTTAGATTCAATGACTGAAAATAACGTCACAGGGGATGA
ACTTGAAACCCAACTCGATAAATTAATTGCCAAATTAACCAAGCTAGGTGGAAAATTAAGTAAGAATCGTCAAAAAGCCG
CGAAGACAATTGAAAAAGAAATCAAGAAGCAATTAGATGATTTGTACATGGATAAAGCAGTTTTTGAAATTAAATTCATG
GATCATCAACCAAACACATTTTATCCCAGTGGGATTGATCAAGTTGAATTTTACATTCAAACCAATCCTGGGGAAGAAAT
GGGACCGTTGGCAAAAATTGCTTCTGGTGGAGAATTGTCCCGTGTGATGTTAGCGTTGAAAACTATTTTTGCACGTTCAC
AAGGAGTAACCAGTATTATCTTTGATGAAGTTGATACAGGTGTGAGCGGGCGAGTTGCGCAAGCGATTGCAGAAAAAATT
AGGGTCATCGCTGATCAGTCTCAAGTACTTTGTATTACCCATTTGCCGCAGGTTGCGGCAATGGCGCAACATCATTTATT
GATTTCTAAGGAAGTTCATGATGACCGAACGATTACATCAGTTGATGAACTTGATGAAAAATCTAGGGTTGATGAACTTG
CCCGTATGCTGGCTGGCGCTGAGGTCACACAACTGACCGTCGAACATGCTAAGGAGTTATTGAACATGGCCAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1X1S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

46.935

100

0.48

Multiple sequence alignment