Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F2A31_RS01855 Genome accession   NZ_CP043909
Coordinates   390392..391051 (-) Length   219 a.a.
NCBI ID   WP_150027621.1    Uniprot ID   A0A5P1UYA7
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385392..396051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS01820 (F2A31_01820) - 386022..386684 (+) 663 WP_150024930.1 outer membrane lipid asymmetry maintenance protein MlaD -
  F2A31_RS01825 (F2A31_01825) - 386704..387336 (+) 633 WP_150024931.1 phospholipid-binding protein MlaC -
  F2A31_RS01830 (F2A31_01830) - 387348..387635 (+) 288 WP_008941206.1 lipid asymmetry maintenance protein MlaB -
  F2A31_RS01835 (F2A31_01835) - 387687..388229 (-) 543 WP_150024932.1 hypothetical protein -
  F2A31_RS01840 (F2A31_01840) - 388231..389247 (-) 1017 WP_150024933.1 CorA family divalent cation transporter -
  F2A31_RS01845 (F2A31_01845) - 389421..390005 (+) 585 WP_150024934.1 TIGR00730 family Rossman fold protein -
  F2A31_RS01850 (F2A31_01850) - 390016..390423 (+) 408 WP_215899264.1 NUDIX domain-containing protein -
  F2A31_RS01855 (F2A31_01855) comF 390392..391051 (-) 660 WP_150027621.1 ComF family protein Machinery gene
  F2A31_RS01860 (F2A31_01860) recG 391044..393089 (-) 2046 WP_150024936.1 ATP-dependent DNA helicase RecG -
  F2A31_RS01865 (F2A31_01865) - 393108..393935 (+) 828 WP_150024937.1 NAD-dependent epimerase/dehydratase family protein -
  F2A31_RS01870 (F2A31_01870) - 394073..395053 (+) 981 WP_150024938.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25109.17 Da        Isoelectric Point: 9.4810

>NTDB_id=386465 F2A31_RS01855 WP_150027621.1 390392..391051(-) (comF) [Acinetobacter suaedae strain C16S1]
MFKLLSNQALRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RLLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTFNIPVWQPVRRLAQHSQKGLSRLERLDNIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSQSLRQLGCQQIYAVCLAAGGVKDSPLSSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=386465 F2A31_RS01855 WP_150027621.1 390392..391051(-) (comF) [Acinetobacter suaedae strain C16S1]
ATGTTTAAGTTACTCAGCAACCAAGCCTTGCGATTCCTTGACCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGCTGAAACAAACAATTGAACGCAATCAACAACAGG
TCTTTGTTGCCTGCCATTATCAATATCCCATCAATCGCATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGATTACTCAGTGGCATATTACAACAAGTTAGACTTCCTAAAGTTCAAGCCATTGTTCCTATGCCAATTTCAACCGATCG
TTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGTTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCTCAACATTCCCAGAAAGGCTTATCACGCCTAGAACGCTTGGATAACATTGAACATCAGTTTATT
GCCCATCCACCCAATAAAATCCGTTATCGAAAAGTGTTAATTGTTGATGATGTCATTACCACTGGCAGCTCGATTGATGC
ATTATCTCAAAGCTTACGTCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAC
CCCTGTCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UYA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.507

95.434

0.635
  comF Acinetobacter baumannii D1279779

66.029

95.434

0.63

Multiple sequence alignment