Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   F1737_RS03290 Genome accession   NZ_CP043875
Coordinates   649588..650604 (-) Length   338 a.a.
NCBI ID   WP_317137358.1    Uniprot ID   -
Organism   Methanochimaera problematica strain FWC-SCC4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 644588..655604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1737_RS03265 (F1737_03260) - 645327..646505 (-) 1179 WP_317137353.1 NDP-sugar synthase -
  F1737_RS03270 (F1737_03265) - 646664..647152 (+) 489 WP_317137354.1 hypothetical protein -
  F1737_RS03275 (F1737_03270) - 647145..647411 (+) 267 WP_317137355.1 hypothetical protein -
  F1737_RS03280 (F1737_03275) - 647478..648929 (-) 1452 WP_317137356.1 cobyric acid synthase -
  F1737_RS03285 (F1737_03280) yciH 649153..649458 (+) 306 WP_317137357.1 stress response translation initiation inhibitor YciH -
  F1737_RS03290 (F1737_03285) epdK 649588..650604 (-) 1017 WP_317137358.1 type II secretion system F family protein Machinery gene
  F1737_RS03295 (F1737_03290) epdJ 650609..651532 (-) 924 WP_317137359.1 type II secretion system F family protein Machinery gene
  F1737_RS03300 (F1737_03295) - 651525..654233 (-) 2709 WP_317137360.1 type II/IV secretion system ATPase subunit -
  F1737_RS03305 (F1737_03300) - 654247..654861 (-) 615 WP_317137361.1 hypothetical protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37086.16 Da        Isoelectric Point: 4.8948

>NTDB_id=386368 F1737_RS03290 WP_317137358.1 649588..650604(-) (epdK) [Methanochimaera problematica strain FWC-SCC4]
MKLFGKKEIIPLEEINEEENHQQEILDKIESRKKANEGFNRILTHPVEVLTEEPINILLLSVPVALFIFLAGIVATVSQY
GLMSLLTSTFIDDLFFFTILISLTPLAILDTKEAMRVRNIEVALPNFFRDVAGMNQSGMTLPNAINTVSNGDYGRLTPHI
IKLNNEMSWNIPFVNAIYRFGESLGTPLARRSVDLIAKASMAGGDVSEVLRAAANDSYEFVNLADERRNNMMIYVVIVLV
SFLVFLFVIAIMTGTFLATMADAGAAVAASGSDAAASGAFGSAIDMDLYRRIFSHAAMIQGFFSGLVAGQMGEGRAIGGL
KYSLIMLTIAWVSFRFFI

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=386368 F1737_RS03290 WP_317137358.1 649588..650604(-) (epdK) [Methanochimaera problematica strain FWC-SCC4]
ATGAAATTATTTGGAAAAAAAGAGATCATTCCCTTAGAAGAAATAAATGAAGAGGAAAATCATCAACAGGAAATTCTTGA
TAAAATAGAATCCAGGAAAAAAGCAAATGAAGGATTTAACAGAATCCTGACTCATCCAGTTGAAGTTCTTACTGAAGAAC
CAATAAATATTCTGCTCCTGTCGGTTCCAGTTGCTTTATTCATATTCTTAGCAGGAATAGTTGCAACAGTAAGCCAGTAT
GGTCTGATGTCACTTCTTACATCGACATTCATTGACGATCTGTTCTTCTTTACAATTCTGATTTCACTGACTCCGCTTGC
AATACTGGATACGAAAGAAGCCATGCGTGTCAGAAATATAGAAGTCGCCCTTCCAAACTTTTTCAGGGATGTGGCAGGTA
TGAATCAAAGTGGAATGACTCTCCCAAATGCTATCAACACAGTTTCAAACGGAGACTACGGAAGACTCACACCGCATATA
ATAAAACTAAACAATGAGATGTCCTGGAACATTCCCTTTGTAAATGCAATTTACCGTTTCGGAGAGAGTCTTGGAACACC
TCTTGCAAGAAGAAGCGTTGATCTTATTGCAAAGGCCAGCATGGCCGGAGGAGATGTAAGTGAGGTTCTTCGTGCCGCTG
CAAATGATTCCTATGAATTTGTAAACCTTGCAGATGAACGGAGAAATAATATGATGATCTACGTGGTCATTGTTTTGGTA
TCATTCCTGGTATTCCTTTTTGTCATCGCAATTATGACAGGAACATTCCTTGCCACAATGGCAGATGCAGGAGCGGCAGT
TGCAGCTTCAGGAAGTGATGCAGCAGCAAGCGGTGCTTTTGGAAGTGCCATAGATATGGACCTTTACAGAAGGATATTTT
CCCACGCCGCAATGATACAGGGATTTTTCTCTGGTCTTGTGGCAGGTCAGATGGGAGAAGGCAGAGCAATTGGAGGACTA
AAATACTCACTCATAATGCTTACAATCGCCTGGGTCTCTTTCAGATTTTTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(127-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

61.146

92.899

0.568

Multiple sequence alignment