Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   F1737_RS03295 Genome accession   NZ_CP043875
Coordinates   650609..651532 (-) Length   307 a.a.
NCBI ID   WP_317137359.1    Uniprot ID   A0AA97FE47
Organism   Methanochimaera problematica strain FWC-SCC4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645609..656532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1737_RS03270 (F1737_03265) - 646664..647152 (+) 489 WP_317137354.1 hypothetical protein -
  F1737_RS03275 (F1737_03270) - 647145..647411 (+) 267 WP_317137355.1 hypothetical protein -
  F1737_RS03280 (F1737_03275) - 647478..648929 (-) 1452 WP_317137356.1 cobyric acid synthase -
  F1737_RS03285 (F1737_03280) yciH 649153..649458 (+) 306 WP_317137357.1 stress response translation initiation inhibitor YciH -
  F1737_RS03290 (F1737_03285) epdK 649588..650604 (-) 1017 WP_317137358.1 type II secretion system F family protein Machinery gene
  F1737_RS03295 (F1737_03290) epdJ 650609..651532 (-) 924 WP_317137359.1 type II secretion system F family protein Machinery gene
  F1737_RS03300 (F1737_03295) - 651525..654233 (-) 2709 WP_317137360.1 type II/IV secretion system ATPase subunit -
  F1737_RS03305 (F1737_03300) - 654247..654861 (-) 615 WP_317137361.1 hypothetical protein -
  F1737_RS03310 (F1737_03305) - 655093..655881 (+) 789 WP_317137362.1 A24 family peptidase C-terminal domain-containing protein -
  F1737_RS03315 (F1737_03310) hisI 655883..656242 (+) 360 WP_317137363.1 phosphoribosyl-AMP cyclohydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34273.07 Da        Isoelectric Point: 7.9284

>NTDB_id=386369 F1737_RS03295 WP_317137359.1 650609..651532(-) (epdJ) [Methanochimaera problematica strain FWC-SCC4]
MNSYERFCFNILGKRAKNKRDNYHSLRNDMLRARMKTPFEAYIATAYVSSFLVGIMMAIIIGLFTYILKLPEMVVYRGNL
PDIVFELSKHSLIIGTIAVVLLSLIIFGGITYAGFLIYPSILAGERKRNIDVTLPYAINYITAMSTAGITPAEVFKLLGE
SEIYGESAVEARYITREVEIFGKDLLDALRIAGQYTPSDRMRDFLQGAVASISSGSNLTEYFRNKSEQYARENRLQQKTF
LETLGLISESYVTALVAGTLFLIILQSIMSSISGSSNPIFLYAVIYGIVPLGSIMFVILIDSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=386369 F1737_RS03295 WP_317137359.1 650609..651532(-) (epdJ) [Methanochimaera problematica strain FWC-SCC4]
ATGAATAGTTATGAAAGATTCTGTTTCAATATTCTGGGCAAAAGAGCGAAGAATAAAAGGGACAATTATCACAGCCTGAG
AAATGATATGCTCAGGGCCAGGATGAAAACTCCCTTTGAAGCCTATATTGCAACAGCTTATGTAAGCTCATTCCTTGTCG
GAATAATGATGGCAATAATTATCGGGCTTTTTACATATATTCTGAAACTTCCGGAAATGGTTGTATACAGGGGCAATCTT
CCCGACATCGTCTTTGAACTGAGCAAACACAGCCTGATTATTGGAACAATTGCAGTTGTTTTACTTTCTCTAATTATTTT
CGGGGGTATCACATATGCAGGATTTTTAATCTATCCAAGTATTCTTGCAGGAGAAAGAAAAAGAAATATTGACGTTACAC
TGCCTTATGCAATAAATTACATAACAGCAATGTCAACTGCAGGAATTACACCTGCCGAGGTCTTCAAACTTTTGGGAGAA
AGCGAAATCTACGGAGAAAGTGCTGTAGAGGCACGCTATATCACGAGAGAAGTGGAAATATTTGGAAAAGATCTCCTCGA
TGCTCTCAGAATTGCCGGTCAGTATACTCCAAGTGACAGAATGCGTGATTTTTTGCAGGGCGCAGTTGCAAGCATTTCCA
GTGGAAGCAACCTTACCGAATATTTCAGAAATAAATCCGAACAATATGCAAGAGAAAACAGACTTCAGCAAAAGACATTT
TTAGAGACGCTTGGACTTATCTCAGAATCTTATGTAACAGCACTTGTTGCAGGAACACTTTTCCTCATAATCCTTCAGTC
GATAATGTCTTCAATAAGCGGCTCTTCAAATCCGATTTTTTTGTATGCCGTAATATATGGCATAGTTCCTCTTGGAAGTA
TAATGTTTGTAATACTCATTGATTCAATGACCCCGGAGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

70.358

100

0.704

Multiple sequence alignment