Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   F0T10_RS10245 Genome accession   NZ_CP043871
Coordinates   1961932..1962327 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956932..1967327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS10225 (F0T10_11420) rfbC 1957010..1957567 (+) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  F0T10_RS10230 (F0T10_11425) - 1957611..1959629 (-) 2019 WP_047917586.1 OPT family oligopeptide transporter -
  F0T10_RS10235 (F0T10_11430) dnaJ 1959824..1960945 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  F0T10_RS10240 (F0T10_11435) - 1961079..1961408 (+) 330 Protein_1988 transposase -
  F0T10_RS10245 (F0T10_11445) comE 1961932..1962327 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  F0T10_RS12740 (F0T10_11450) - 1962432..1962548 (-) 117 Protein_1990 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=386360 F0T10_RS10245 WP_003703428.1 1961932..1962327(-) (comE) [Neisseria gonorrhoeae strain NG196]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=386360 F0T10_RS10245 WP_003703428.1 1961932..1962327(-) (comE) [Neisseria gonorrhoeae strain NG196]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment