Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   HHJ56_RS08775 Genome accession   NZ_CP051642
Coordinates   1837987..1838292 (+) Length   101 a.a.
NCBI ID   WP_035688436.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832987..1843292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS08745 (HHJ56_08745) tolB 1833892..1835199 (+) 1308 WP_035688440.1 Tol-Pal system beta propeller repeat protein TolB -
  HHJ56_RS08750 (HHJ56_08750) pal 1835210..1835662 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  HHJ56_RS08760 (HHJ56_08760) comN 1836098..1836619 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HHJ56_RS08765 (HHJ56_08765) comO 1836620..1837339 (+) 720 WP_035688438.1 type II secretion system protein J Machinery gene
  HHJ56_RS08770 (HHJ56_08770) - 1837341..1838006 (+) 666 WP_051128113.1 DUF2572 family protein -
  HHJ56_RS08775 (HHJ56_08775) comQ 1837987..1838292 (+) 306 WP_035688436.1 DUF5374 domain-containing protein Machinery gene
  HHJ56_RS08780 (HHJ56_08780) recC 1838304..1841708 (+) 3405 WP_035688434.1 exodeoxyribonuclease V subunit gamma -
  HHJ56_RS08785 (HHJ56_08785) - 1841746..1842564 (-) 819 WP_035688432.1 pyridoxal phosphatase -
  HHJ56_RS08790 (HHJ56_08790) araD 1842592..1843287 (-) 696 WP_035688430.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11846.74 Da        Isoelectric Point: 9.7195

>NTDB_id=386350 HHJ56_RS08775 WP_035688436.1 1837987..1838292(+) (comQ) [Avibacterium paragallinarum strain ADL-AP01]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMELDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=386350 HHJ56_RS08775 WP_035688436.1 1837987..1838292(+) (comQ) [Avibacterium paragallinarum strain ADL-AP01]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTCTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGAGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

44.318

87.129

0.386

Multiple sequence alignment