Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F1614_RS11255 | Genome accession | NZ_CP043847 |
| Coordinates | 2336840..2337235 (+) | Length | 131 a.a. |
| NCBI ID | WP_017464707.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain NCCP 16828 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2331840..2342235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1614_RS11230 (F1614_11305) | - | 2333259..2333663 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| F1614_RS11235 (F1614_11310) | - | 2333812..2334045 (+) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| F1614_RS11240 (F1614_11315) | murA | 2334155..2335420 (+) | 1266 | WP_017464708.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| F1614_RS11245 (F1614_11320) | fabZ | 2335454..2335891 (+) | 438 | WP_158171952.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| F1614_RS11250 (F1614_11325) | - | 2336209..2336649 (-) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| F1614_RS11255 (F1614_11330) | ssb | 2336840..2337235 (+) | 396 | WP_017464707.1 | single-stranded DNA-binding protein | Machinery gene |
| F1614_RS11260 (F1614_11335) | - | 2337623..2338282 (+) | 660 | WP_002474611.1 | transglycosylase family protein | - |
| F1614_RS11265 (F1614_11340) | tenA | 2338567..2339256 (+) | 690 | WP_017464706.1 | thiaminase II | - |
| F1614_RS11270 (F1614_11345) | thiD | 2339249..2340070 (+) | 822 | WP_002498782.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| F1614_RS11275 (F1614_11350) | thiM | 2340063..2340851 (+) | 789 | WP_002498781.1 | hydroxyethylthiazole kinase | - |
| F1614_RS11280 (F1614_11355) | thiE | 2340857..2341495 (+) | 639 | WP_032605303.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15148.98 Da Isoelectric Point: 5.2661
>NTDB_id=386255 F1614_RS11255 WP_017464707.1 2336840..2337235(+) (ssb) [Staphylococcus epidermidis strain NCCP 16828]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSSKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSSKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=386255 F1614_RS11255 WP_017464707.1 2336840..2337235(+) (ssb) [Staphylococcus epidermidis strain NCCP 16828]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTTGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCTCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTTGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCTCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |