Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F1614_RS02820 Genome accession   NZ_CP043847
Coordinates   616503..617375 (-) Length   290 a.a.
NCBI ID   WP_017464325.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NCCP 16828     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 578046..648768 616503..617375 within 0


Gene organization within MGE regions


Location: 578046..648768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1614_RS02675 (F1614_02690) yfmF 579086..580357 (-) 1272 WP_002468568.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  F1614_RS02680 (F1614_02695) - 580387..581100 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  F1614_RS02685 (F1614_02700) - 581103..583496 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  F1614_RS02690 (F1614_02705) rnjB 583762..585435 (-) 1674 WP_158171739.1 ribonuclease J2 -
  F1614_RS02695 (F1614_02710) pnp 585803..587908 (-) 2106 WP_002468566.1 polyribonucleotide nucleotidyltransferase -
  F1614_RS02700 (F1614_02715) rpsO 588040..588309 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  F1614_RS02705 (F1614_02720) - 588429..589400 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  F1614_RS02710 (F1614_02725) truB 589416..590333 (-) 918 WP_017464330.1 tRNA pseudouridine(55) synthase TruB -
  F1614_RS02715 (F1614_02730) rbfA 590471..590821 (-) 351 WP_158171740.1 30S ribosome-binding factor RbfA -
  F1614_RS02720 (F1614_02735) infB 591122..593284 (-) 2163 WP_017464329.1 translation initiation factor IF-2 -
  F1614_RS02725 (F1614_02740) - 593289..593606 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  F1614_RS02730 (F1614_02745) rnpM 593606..593890 (-) 285 WP_002468555.1 RNase P modulator RnpM -
  F1614_RS02735 (F1614_02750) nusA 593908..595131 (-) 1224 WP_017464328.1 transcription termination factor NusA -
  F1614_RS02740 (F1614_02755) rimP 595152..595619 (-) 468 WP_002473841.1 ribosome maturation factor RimP -
  F1614_RS02745 (F1614_02760) - 595799..600109 (-) 4311 WP_158171978.1 PolC-type DNA polymerase III -
  F1614_RS02750 (F1614_02765) - 600359..602062 (-) 1704 WP_017464327.1 proline--tRNA ligase -
  F1614_RS02755 (F1614_02770) rseP 602081..603367 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  F1614_RS02760 (F1614_02775) - 603601..604383 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  F1614_RS02765 (F1614_02780) - 604387..605157 (-) 771 WP_002468551.1 isoprenyl transferase -
  F1614_RS02770 (F1614_02785) frr 605378..605932 (-) 555 WP_002468545.1 ribosome recycling factor -
  F1614_RS02775 (F1614_02790) pyrH 605949..606671 (-) 723 WP_002439511.1 UMP kinase -
  F1614_RS02780 (F1614_02795) tsf 606812..607690 (-) 879 WP_002439509.1 translation elongation factor Ts -
  F1614_RS02785 (F1614_02800) rpsB 607842..608630 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  F1614_RS02790 (F1614_02805) codY 608989..609762 (-) 774 WP_002446289.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  F1614_RS02795 (F1614_02810) hslU 609786..611189 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  F1614_RS02800 (F1614_02815) hslV 611258..611800 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  F1614_RS02805 (F1614_02820) xerC 611804..612664 (-) 861 WP_411861269.1 tyrosine recombinase XerC -
  F1614_RS02810 (F1614_02825) trmFO 612919..614226 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  F1614_RS02815 (F1614_02830) topA 614251..616320 (-) 2070 WP_158171741.1 type I DNA topoisomerase -
  F1614_RS02820 (F1614_02835) dprA 616503..617375 (-) 873 WP_017464325.1 DNA-processing protein DprA Machinery gene
  F1614_RS02825 (F1614_02840) sucD 618099..619007 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  F1614_RS02830 (F1614_02845) sucC 619029..620195 (-) 1167 WP_017464324.1 ADP-forming succinate--CoA ligase subunit beta -
  F1614_RS02835 (F1614_02850) - 620303..621073 (-) 771 WP_002498365.1 ribonuclease HII -
  F1614_RS02840 (F1614_02855) ylqF 621078..621941 (-) 864 WP_158171742.1 ribosome biogenesis GTPase YlqF -
  F1614_RS02850 (F1614_02865) - 622270..624870 (+) 2601 WP_017464323.1 YfhO family protein -
  F1614_RS02855 (F1614_02870) - 624863..627466 (+) 2604 WP_059279849.1 YfhO family protein -
  F1614_RS02860 (F1614_02875) rplS 628019..628369 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  F1614_RS02865 (F1614_02880) trmD 628475..629212 (-) 738 WP_017464321.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F1614_RS02870 (F1614_02885) rimM 629212..629715 (-) 504 WP_002473837.1 ribosome maturation factor RimM -
  F1614_RS02875 (F1614_02890) rpsP 629842..630117 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  F1614_RS02880 (F1614_02895) ffh 630363..631730 (-) 1368 WP_001830113.1 signal recognition particle protein -
  F1614_RS02885 (F1614_02900) - 631761..632093 (-) 333 WP_002457379.1 putative DNA-binding protein -
  F1614_RS02890 (F1614_02905) ftsY 632095..633321 (-) 1227 WP_017464320.1 signal recognition particle-docking protein FtsY -
  F1614_RS02895 (F1614_02910) smc 633318..636887 (-) 3570 WP_059279850.1 chromosome segregation protein SMC -
  F1614_RS02900 (F1614_02915) rnc 637014..637751 (-) 738 WP_002498371.1 ribonuclease III -
  F1614_RS02905 (F1614_02920) - 637866..638099 (-) 234 WP_001830184.1 acyl carrier protein -
  F1614_RS02910 (F1614_02925) fabG 638296..639030 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  F1614_RS02915 (F1614_02930) fabD 639023..639949 (-) 927 WP_002473278.1 ACP S-malonyltransferase -
  F1614_RS02920 (F1614_02935) plsX 639951..640928 (-) 978 WP_002469384.1 phosphate acyltransferase PlsX -
  F1614_RS02925 (F1614_02940) fapR 640930..641490 (-) 561 WP_001830099.1 transcription factor FapR -
  F1614_RS02930 (F1614_02945) recG 641649..643697 (-) 2049 WP_017464318.1 ATP-dependent DNA helicase RecG -
  F1614_RS02935 (F1614_02950) fakA 643902..645560 (-) 1659 WP_017464317.1 fatty acid kinase catalytic subunit FakA -
  F1614_RS02940 (F1614_02955) - 645575..645949 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  F1614_RS02945 (F1614_02960) rpmB 646307..646495 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  F1614_RS02950 (F1614_02965) - 646578..647213 (-) 636 WP_002498376.1 thiamine diphosphokinase -
  F1614_RS02955 (F1614_02970) rpe 647218..647862 (-) 645 WP_059279851.1 ribulose-phosphate 3-epimerase -
  F1614_RS02960 (F1614_02975) rsgA 647863..648738 (-) 876 WP_001830137.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33825.81 Da        Isoelectric Point: 9.4834

>NTDB_id=386240 F1614_RS02820 WP_017464325.1 616503..617375(-) (dprA) [Staphylococcus epidermidis strain NCCP 16828]
MIQHTMLKLYWANFTTAQLHHLTRTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKMMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRIKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=386240 F1614_RS02820 WP_017464325.1 616503..617375(-) (dprA) [Staphylococcus epidermidis strain NCCP 16828]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACACGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGATGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCACTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGAGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAATTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGAGTGCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566
  dprA Staphylococcus aureus N315

56.944

99.31

0.566

Multiple sequence alignment