Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F1613_RS11430 | Genome accession | NZ_CP043845 |
| Coordinates | 2343183..2343578 (-) | Length | 131 a.a. |
| NCBI ID | WP_002457121.1 | Uniprot ID | A0A7H5C5S7 |
| Organism | Staphylococcus epidermidis strain ATCC 12228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2338183..2348578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1613_RS11405 (F1613_11415) | thiE | 2338924..2339562 (-) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
| F1613_RS11410 (F1613_11420) | thiM | 2339568..2340356 (-) | 789 | WP_002469583.1 | hydroxyethylthiazole kinase | - |
| F1613_RS11415 (F1613_11425) | thiD | 2340349..2341170 (-) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| F1613_RS11420 (F1613_11430) | tenA | 2341163..2341852 (-) | 690 | WP_001829894.1 | thiaminase II | - |
| F1613_RS11425 (F1613_11435) | - | 2342136..2342795 (-) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| F1613_RS11430 (F1613_11440) | ssb | 2343183..2343578 (-) | 396 | WP_002457121.1 | single-stranded DNA-binding protein | Machinery gene |
| F1613_RS11435 (F1613_11445) | - | 2343769..2344209 (+) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| F1613_RS11440 (F1613_11450) | fabZ | 2344527..2344964 (-) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| F1613_RS11445 (F1613_11455) | murA | 2344998..2346263 (-) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| F1613_RS11450 (F1613_11460) | - | 2346373..2346606 (-) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| F1613_RS11455 (F1613_11465) | - | 2346755..2347159 (-) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15159.02 Da Isoelectric Point: 5.2661
>NTDB_id=386223 F1613_RS11430 WP_002457121.1 2343183..2343578(-) (ssb) [Staphylococcus epidermidis strain ATCC 12228]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=386223 F1613_RS11430 WP_002457121.1 2343183..2343578(-) (ssb) [Staphylococcus epidermidis strain ATCC 12228]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |