Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   F1612_RS06410 Genome accession   NZ_CP043843
Coordinates   1244251..1244937 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP 16830     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239251..1249937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1612_RS06375 (F1612_06510) yqeH 1239778..1240878 (+) 1101 WP_045173041.1 ribosome biogenesis GTPase YqeH -
  F1612_RS06380 (F1612_06515) aroE 1240892..1241698 (+) 807 WP_045173040.1 shikimate dehydrogenase -
  F1612_RS06385 (F1612_06520) yhbY 1241702..1241992 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  F1612_RS06390 (F1612_06525) nadD 1241995..1242564 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  F1612_RS06395 (F1612_06530) yqeK 1242554..1243138 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  F1612_RS06400 (F1612_06535) rsfS 1243139..1243492 (+) 354 WP_001088020.1 ribosome silencing factor -
  F1612_RS06405 (F1612_06540) - 1243495..1244211 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  F1612_RS06410 (F1612_06545) comEA 1244251..1244937 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  F1612_RS06415 (F1612_06550) - 1245029..1245490 (+) 462 WP_158172979.1 ComE operon protein 2 -
  F1612_RS06420 (F1612_06555) comEC 1245495..1247696 (+) 2202 WP_045173038.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  F1612_RS06425 (F1612_06560) holA 1247753..1248727 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  F1612_RS06430 (F1612_06565) rpsT 1248772..1249023 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=386163 F1612_RS06410 WP_001788928.1 1244251..1244937(+) (comEA) [Staphylococcus aureus strain NCCP 16830]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=386163 F1612_RS06410 WP_001788928.1 1244251..1244937(+) (comEA) [Staphylococcus aureus strain NCCP 16830]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment