Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HHJ59_RS02300 Genome accession   NZ_CP051639
Coordinates   439991..442072 (+) Length   693 a.a.
NCBI ID   WP_035689011.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 434991..447072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ59_RS02280 (HHJ59_02280) gapA 435525..436529 (-) 1005 WP_035688995.1 glyceraldehyde-3-phosphate dehydrogenase -
  HHJ59_RS02285 (HHJ59_02285) gmk 436823..437449 (+) 627 WP_035688997.1 guanylate kinase -
  HHJ59_RS02290 (HHJ59_02290) rpoZ 437516..437782 (+) 267 WP_035689000.1 DNA-directed RNA polymerase subunit omega -
  HHJ59_RS02295 (HHJ59_02295) spoT 437855..439978 (+) 2124 WP_035689008.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  HHJ59_RS02300 (HHJ59_02300) recG 439991..442072 (+) 2082 WP_035689011.1 ATP-dependent DNA helicase RecG Machinery gene
  HHJ59_RS02305 (HHJ59_02305) murI 442148..442936 (+) 789 WP_035689014.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78076.66 Da        Isoelectric Point: 8.8546

>NTDB_id=386153 HHJ59_RS02300 WP_035689011.1 439991..442072(+) (recG) [Avibacterium paragallinarum strain ADL-AP10]
MAMDVLGAVPLTTLSGVGAAISAKLSRIGINNLQDLLFHLPSRYEDRTRITPIIDLRPEQYATISAVVQLCEVQFGRRPI
LTVVVSDGTSKLTLRFFNFNAAMRNSFQVGTKVKAFGEIKRGRFMAEIHHPEYQILRDDTPLIMAETLTPIYPTTEGLKQ
NSLRKLTDQALALLDKVQLPEILPDEFNPYPYSLKEAIRFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKVR
SNIQQFFALPLQYQTDLKSRFLQRLPFSPTNAQRRVVQDIERDLQKPYPMMRLVQGDVGSGKTLVAALAALLAIDNQKQV
ALMAPTEILAEQHFANFQNWFEPLGIKVGWLAGKVKGKARQAVLEQMKAGEVQMIVGTHALFQQDVEFHDLALVIIDEQH
RFGVHQRLMLREKGEKSGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAVSEERRGEIVNRVYHACM
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLSKALPNLRIGLVHGRMKATEKQAIMASFKAAELDVLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSKKRLQVLRESQDGFYISEKDLEIRGPGEVLGTKQ
TGVAEFKVANLMRDRKMIPTVQHYAREMIVKYPQLSEALIQRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=386153 HHJ59_RS02300 WP_035689011.1 439991..442072(+) (recG) [Avibacterium paragallinarum strain ADL-AP10]
ATGGCTATGGACGTTTTAGGTGCAGTTCCCCTCACGACATTATCGGGCGTGGGAGCAGCGATTTCAGCAAAACTCAGCCG
TATTGGCATTAATAATCTGCAAGATCTGCTTTTCCATTTACCAAGCCGTTATGAAGATCGCACAAGAATTACACCCATTA
TCGATCTTCGCCCCGAACAATATGCCACCATTAGTGCTGTTGTGCAGCTCTGCGAAGTGCAATTTGGTCGCCGTCCGATT
TTAACGGTCGTGGTGTCTGATGGCACATCGAAGCTGACCCTACGTTTTTTCAATTTCAATGCCGCAATGCGAAACAGCTT
TCAAGTGGGAACGAAAGTGAAAGCCTTTGGCGAAATCAAACGAGGTCGCTTTATGGCAGAAATTCATCACCCCGAATATC
AAATTTTGCGTGATGATACCCCCTTGATAATGGCGGAAACCCTCACCCCGATTTATCCCACAACGGAGGGGCTGAAACAA
AATTCCTTGCGAAAGCTCACCGATCAAGCCTTGGCACTGTTAGATAAAGTGCAGCTGCCCGAAATTTTGCCTGATGAATT
TAATCCTTATCCATACAGTTTGAAAGAGGCGATCCGTTTTCTACACCGTCCACCGCCAGATGTGTCGTTGGAAATGTTGG
AAAAAGGGCAACACCCCGCACAAGTGCGGTTAATTTTTGAAGAGTTATTGGCACATAATTTGGCAATGCAAAAAGTGCGG
TCAAATATTCAGCAGTTTTTTGCGCTGCCCTTACAATATCAAACGGATCTCAAATCACGCTTTTTACAGCGTTTACCCTT
CAGCCCCACCAATGCACAACGCCGAGTGGTGCAGGATATTGAGCGGGATTTGCAAAAGCCTTATCCAATGATGCGATTAG
TGCAGGGCGATGTGGGATCGGGGAAAACCTTGGTCGCGGCATTAGCTGCACTGCTAGCAATTGACAATCAAAAGCAAGTG
GCACTTATGGCACCAACAGAAATTTTGGCGGAACAGCATTTTGCCAATTTCCAAAATTGGTTTGAGCCTTTAGGCATCAA
AGTGGGGTGGCTGGCAGGAAAAGTCAAAGGCAAGGCACGCCAAGCGGTACTTGAACAAATGAAAGCGGGTGAAGTGCAAA
TGATTGTCGGCACGCACGCTCTATTTCAGCAAGATGTGGAATTTCACGATTTAGCATTGGTGATCATTGATGAACAACAT
CGCTTTGGCGTTCATCAGCGGCTAATGCTGCGGGAAAAAGGCGAAAAATCAGGCAATTACCCTCATCAATTAATTATGAC
CGCCACCCCGATTCCGCGTACCCTAGCAATGACGGTGTATGCGGATTTAGATACATCAATTATTGATGAATTACCACCAG
GCAGAACGCCGATTACCACCGTTGCGGTGTCCGAAGAACGCCGCGGAGAAATTGTAAACCGTGTGTATCACGCCTGTATG
AATGAAAAACGCCAAGCCTATTGGGTGTGTACTTTAATTGACGAAAGCGAGGTCTTGGAGGCACAAGCGGCAGAGGCGAT
ATGGGAAGATCTCAGCAAAGCACTTCCAAACTTACGCATTGGATTAGTACACGGGCGTATGAAAGCGACAGAAAAACAAG
CAATTATGGCGAGTTTCAAAGCCGCCGAGTTAGATGTGTTGGTGGCAACCACGGTAATTGAAGTAGGAGTGGACGTGCCG
AATGCCAGCTTGATGATTATTGAAAATGCAGAACGCTTAGGCTTGTCGCAATTACACCAGTTGCGTGGGCGAGTGGGGCG
TGGCAGCACCGCCTCTTTCTGCGTGTTAATGTATAAACCGCCACTGGGTAAGGTGTCGAAAAAACGTCTGCAAGTACTGC
GTGAAAGCCAAGACGGCTTTTATATTTCAGAAAAAGATCTAGAAATTCGTGGGCCGGGGGAAGTGTTAGGCACAAAACAA
ACCGGTGTGGCCGAATTTAAAGTGGCGAATTTAATGCGTGATCGAAAAATGATCCCAACTGTACAGCATTATGCTAGAGA
AATGATCGTGAAATATCCCCAACTTTCTGAAGCTTTAATTCAGCGTTGGCTTGATGAGAAAACCGTTTATTCCAATGCGT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(291-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.48

97.114

0.481
  recG/mmsA Streptococcus pneumoniae R6

40.826

94.372

0.385
  recG/mmsA Streptococcus pneumoniae R36A

40.826

94.372

0.385
  recG Bacillus subtilis subsp. subtilis str. 168

38.633

97.114

0.375

Multiple sequence alignment