Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   HHJ59_RS02110 Genome accession   NZ_CP051639
Coordinates   397340..400168 (-) Length   942 a.a.
NCBI ID   WP_035687804.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 392340..405168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ59_RS02085 (HHJ59_02085) hutX 393508..394017 (+) 510 WP_035687791.1 heme utilization cystosolic carrier protein HutX -
  HHJ59_RS02090 (HHJ59_02090) hutZ 394011..394529 (+) 519 WP_035687799.1 heme utilization protein HutZ -
  HHJ59_RS02095 (HHJ59_02095) mreD 394556..395038 (-) 483 WP_035687802.1 rod shape-determining protein MreD -
  HHJ59_RS02100 (HHJ59_02100) mreC 395038..396075 (-) 1038 WP_017805686.1 rod shape-determining protein MreC -
  HHJ59_RS02105 (HHJ59_02105) - 396148..397194 (-) 1047 WP_017805687.1 rod shape-determining protein -
  HHJ59_RS02110 (HHJ59_02110) uvrA 397340..400168 (-) 2829 WP_035687804.1 excinuclease ABC subunit UvrA Machinery gene
  HHJ59_RS02115 (HHJ59_02115) ssb 400335..400850 (+) 516 WP_035687806.1 single-stranded DNA-binding protein Machinery gene
  HHJ59_RS11925 (HHJ59_02120) - 400996..402070 (-) 1075 Protein_412 alpha/beta hydrolase -
  HHJ59_RS02125 (HHJ59_02125) - 402352..404109 (+) 1758 WP_035687809.1 DUF262 domain-containing protein -
  HHJ59_RS02130 (HHJ59_02130) - 404238..404583 (+) 346 Protein_414 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104126.00 Da        Isoelectric Point: 7.3294

>NTDB_id=386151 HHJ59_RS02110 WP_035687804.1 397340..400168(-) (uvrA) [Avibacterium paragallinarum strain ADL-AP10]
MEKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPNHHIPLAAQTISQMVDKVLALPEESRMMLLAPVVKDRKG
EHIKILEHIAAQGYIRARIDGEICDLSDPPKLALQKKHTIEVVVDRFKVRPDLATRLAESFETALELSGGTAVVANMDDP
KAEELLFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPSISLAGGAIKGWDRRNFYYYQM
LTSLAKHYGFNVESPFEELPKKIQHIILHGSGKEEIEFQYMNDRGDVVLRRHSFEGILNNMARRYKETESMAVREELAKH
ISTRPCKDCGGSRLRQEARNVFIGETNLPEVSEKSIGEAFNFVDSLTLSGQRAQIADKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILAADHIIDI
GPGAGVHGGNVVAQGTAQEIMQDPNSLTGKFLSGKEKIEIPQKRTALDKKKILKLKGASGNNLKNVNLEIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQSALNRAENAQAAPYKSIDGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTINQVLDMTVEEAREFF
DAIPQIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLDVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAEVKGSHTARFLKQILKK

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=386151 HHJ59_RS02110 WP_035687804.1 397340..400168(-) (uvrA) [Avibacterium paragallinarum strain ADL-AP10]
ATGGAAAAAATAGAAGTAAGAGGGGCGAGAACCCACAATTTAAAAAATATTAATTTAACCATCCCCCGCGATAAATTGAT
TGTGATCACGGGGCTATCTGGTTCAGGCAAATCCTCTCTAGCCTTTGACACCCTATATGCAGAAGGACAACGCCGTTATG
TAGAATCCCTGTCGGCTTATGCACGTCAATTTTTATCGTTGATGGAAAAACCAGACGTGGATCATATTGAAGGTTTATCC
CCCGCGATTTCTATTGAGCAAAAATCAACATCTCACAACCCACGTTCTACAGTGGGAACAATCACGGAAATTCATGATTA
TTTGCGTTTATTATTTGCCCGTGTGGGGGAGCCTCGCTGCCCGAATCACCATATCCCTTTGGCAGCACAAACAATTAGCC
AGATGGTGGATAAGGTGCTGGCATTGCCGGAAGAAAGCCGAATGATGTTGCTTGCCCCAGTGGTGAAAGATCGCAAAGGG
GAACATATTAAAATTTTAGAACATATTGCCGCGCAAGGTTATATCCGCGCCAGAATTGATGGGGAAATTTGCGATCTTTC
TGATCCACCAAAATTAGCATTACAAAAAAAGCACACCATTGAAGTTGTGGTGGATCGCTTTAAAGTTCGTCCAGATTTGG
CAACCCGCTTAGCGGAATCATTTGAAACTGCGTTAGAACTTTCTGGTGGCACGGCAGTGGTGGCGAATATGGACGATCCG
AAAGCGGAAGAATTGCTGTTTTCCGCAAACTTTGCTTGTCCGCATTGTGGCTATTCTGTACCAGAACTTGAGCCTCGCTT
ATTTTCCTTTAATAACCCTGCGGGGGCTTGCCCGACTTGTGATGGCTTGGGGGTTCAGCAATACTTTGATGAAAAACGCG
TGGTGCAAAATCCAAGCATTTCCTTAGCTGGTGGGGCGATTAAAGGTTGGGATCGGCGTAATTTCTATTATTATCAGATG
CTCACCTCATTGGCAAAACATTATGGTTTTAATGTGGAAAGCCCATTCGAAGAATTACCAAAAAAAATTCAACACATTAT
TCTGCACGGCTCAGGCAAAGAAGAGATTGAATTCCAATATATGAATGATCGCGGTGATGTCGTGCTACGCCGTCATAGCT
TTGAGGGCATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGGCGGTGCGTGAAGAGTTAGCGAAACAT
ATCAGCACTCGCCCTTGTAAAGATTGCGGGGGTTCTCGCTTACGTCAAGAGGCTCGCAATGTATTTATTGGGGAAACAAA
TCTTCCCGAAGTTTCTGAAAAAAGTATTGGGGAAGCCTTTAACTTTGTAGATAGCCTAACCTTAAGCGGACAACGTGCTC
AAATTGCAGACAAAATTTTGAAAGAAATCAAAGAGCGGTTGCAATTTTTAGTCAATGTTGGCTTAAATTACCTCTCCCTT
TCCCGATCCGCCGAAACCCTTTCTGGCGGTGAAGCACAACGTATTCGCCTCGCAAGCCAAATCGGGGCGGGTTTAGTGGG
GGTGATGTATGTACTTGATGAGCCTTCTATTGGCTTACATCAACGCGATAATGAGCGTTTACTTAACACGTTGATTCATC
TAAGAAACTTAGGGAATACAGTGATTGTGGTAGAACACGATGAAGATGCTATTCTTGCTGCGGATCATATTATTGATATT
GGACCAGGTGCGGGCGTACACGGCGGCAATGTTGTTGCTCAAGGCACTGCTCAAGAAATCATGCAAGATCCAAATTCTTT
GACGGGGAAATTTTTATCTGGAAAGGAAAAAATAGAAATTCCGCAAAAACGCACCGCACTTGATAAAAAGAAAATCTTAA
AACTTAAAGGGGCTTCGGGCAACAACTTAAAAAATGTCAATTTAGAAATCCCCGTTGGATTATTTACTTGCGTCACCGGC
GTATCTGGTTCGGGCAAATCCACATTAATTAACGACACTTTATTTCCTTTAGCACAAAGTGCATTAAACCGTGCTGAAAA
CGCCCAAGCCGCACCATACAAATCGATCGATGGACTCGAATTTTTTGACAAAGTGATTGATATTGACCAAAGCCCGATTG
GACGTACACCGCGTTCAAATCCTGCTACTTATACGGGATTATTCACCCCTATCCGCGAATTATTCGCTGGTGTACCAGAA
GCTCGAGCAAGAGGCTACAATCCCGGTCGATTTAGCTTTAACGTGCGAGGCGGACGCTGTGAAGCCTGTCAAGGAGATGG
GGTAATCAAAGTAGAAATGCACTTTTTACCTGATGTTTATGTCCCTTGTGATCAATGCAAAGGAAAACGTTACAATCGTG
AAACCTTAGAAATTCGTTACAAAGGCAAAACGATTAACCAAGTGTTGGATATGACAGTGGAAGAAGCTCGTGAGTTTTTT
GATGCTATCCCACAAATTGCTCGCAAATTGCAAACCTTAATGGATGTTGGGCTTTCTTATATCCGTTTAGGGCAATCTTC
CACCACGCTTTCTGGTGGTGAAGCACAACGCGTAAAATTAGCCACTGAGCTGTCTAAACGAGATACGGGAAAAACATTGT
ATATTCTTGACGAGCCAACAACAGGTTTGCATTTTGCCGATATTAAACAACTGCTTGATGTCTTGCACCGCTTGCGTGAC
CAAGGTAATACGATTGTGGTGATTGAGCATAATTTAGATGTTATCAAAACTGCAGATTGGATTGTAGATCTTGGGCCTGA
AGGTGGTAGTGGAGGCGGGCAAATCATTGCGACAGGCACGCCAGAACAAGTTGCGGAGGTTAAAGGTTCGCATACAGCAC
GCTTCTTAAAGCAAATACTCAAAAAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

58.191

99.788

0.581
  uvrA Streptococcus pneumoniae TIGR4

58.191

99.788

0.581
  uvrA Streptococcus pneumoniae D39

58.191

99.788

0.581

Multiple sequence alignment