Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F1616_RS03105 | Genome accession | NZ_CP043841 |
| Coordinates | 626468..626863 (-) | Length | 131 a.a. |
| NCBI ID | WP_001829977.1 | Uniprot ID | A0A4Q9W3V8 |
| Organism | Staphylococcus epidermidis strain NCCP 16829 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 621468..631863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1616_RS03080 (F1616_03080) | thiE | 622208..622846 (-) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
| F1616_RS03085 (F1616_03085) | thiM | 622852..623640 (-) | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
| F1616_RS03090 (F1616_03090) | thiD | 623633..624454 (-) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| F1616_RS03095 (F1616_03095) | tenA | 624447..625136 (-) | 690 | WP_001829894.1 | thiaminase II | - |
| F1616_RS03100 (F1616_03100) | - | 625421..626080 (-) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| F1616_RS03105 (F1616_03105) | ssb | 626468..626863 (-) | 396 | WP_001829977.1 | single-stranded DNA-binding protein | Machinery gene |
| F1616_RS03110 (F1616_03110) | - | 627054..627494 (+) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| F1616_RS03115 (F1616_03115) | fabZ | 627812..628249 (-) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| F1616_RS03120 (F1616_03120) | murA | 628283..629548 (-) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| F1616_RS03125 (F1616_03125) | - | 629658..629891 (-) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| F1616_RS03130 (F1616_03130) | - | 630040..630444 (-) | 405 | WP_001829924.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15158.08 Da Isoelectric Point: 5.2661
>NTDB_id=386119 F1616_RS03105 WP_001829977.1 626468..626863(-) (ssb) [Staphylococcus epidermidis strain NCCP 16829]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=386119 F1616_RS03105 WP_001829977.1 626468..626863(-) (ssb) [Staphylococcus epidermidis strain NCCP 16829]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |