Detailed information NTG0386028

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HHJ61_RS00295
• Genome accession: NZ_CP051637
• Coordinates: 64993..66243 (+)
• Length: 416 a.a.
• NCBI ID: WP_035685587.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain ADL-AP16
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 59993..71243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ61_RS00270 (HHJ61_00270)	-	61104..61406 (+)	303	WP_302476575.1	DUF305 domain-containing protein	-
HHJ61_RS00275 (HHJ61_00275)	-	61566..61934 (+)	369	Protein_55	DNA-processing protein DprA	-
HHJ61_RS00280 (HHJ61_00280)	-	61932..62477 (-)	546	Protein_56	BCCT family transporter	-
HHJ61_RS00285 (HHJ61_00285)	tig	62983..64281 (+)	1299	WP_035685589.1	trigger factor	-
HHJ61_RS00290 (HHJ61_00290)	clpP	64399..64989 (+)	591	WP_017806897.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HHJ61_RS00295 (HHJ61_00295)	clpX	64993..66243 (+)	1251	WP_035685587.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
HHJ61_RS00300 (HHJ61_00300)	aspA	66466..67893 (+)	1428	WP_035685584.1	aspartate ammonia-lyase	-
HHJ61_RS00305 (HHJ61_00305)	-	67984..69780 (-)	1797	WP_035685582.1	long-chain fatty acid--CoA ligase	-
HHJ61_RS00310 (HHJ61_00310)	rimI	69941..70384 (-)	444	WP_017805347.1	ribosomal protein S18-alanine N-acetyltransferase	-
HHJ61_RS00315 (HHJ61_00315)	-	70386..70796 (-)	411	WP_026138449.1	DNA polymerase III subunit psi	-

Sequence

Protein

• Length: 416 a.a.
• Molecular weight: 45789.51 Da
• Isoelectric Point: 4.8097

>NTDB_id=386028 HHJ61_RS00295 WP_035685587.1 64993..66243(+) (clpX) [Avibacterium paragallinarum strain ADL-AP16]
MTTEQQLHCSICGKERSEVKKLIAGEDGAICNECIELCHNLLVEAEQQANENPQENASQPEKAELPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHDALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKKQAPQIIYKS

Nucleotide

• Length: 1251 bp

>NTDB_id=386028 HHJ61_RS00295 WP_035685587.1 64993..66243(+) (clpX) [Avibacterium paragallinarum strain ADL-AP16]
ATGACAACAGAACAACAACTCCATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTCAAAAAATTGATCGCGGGTGAAGA
TGGGGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGAGGCAGAGCAACAAGCAAACGAAAACCCGC
AAGAAAACGCCTCACAACCTGAAAAGGCAGAATTACCTACACCTCATCAAATTCGTGCGCATTTAGATGATTATGTTATT
GGGCAAGACTACGCTAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTTATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTAAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACGATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGATGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACAGGGGCGAGGGGATTGC
GTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAAACAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (113-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.664	98.798	0.57
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.122	98.558	0.543